CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-QTL_3PxA4_2008_Leaf_morph3  (Reference Set)
Min. Correspondence
Align Vertically
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Maps LG6F
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Magnification
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
gSSR
QTL
SCAR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: QTL [ View Map Type Info ]
Map Set Name: Quercus robur - QTL_3PxA4_2008_Leaf_morphology3 [ View Map Set Info ]
Map Name: LG6F
Map Start: 0.00 cM
Map Stop: 82.70 cM
Features by Type:
1 QTL
3 gSSR
1 SCAR
3 AFLP
8 Total

Map Features

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Items 1 to 8 of 8.
Quercus robur - QTL_3PxA4_2008_Leaf_morphology3 - LG6F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
B11-1500 SCAR 0.00 Quercus robur - QTL_3PxA4_2008_Hypoxie - LG6F B11-1500 SCAR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG6F B11-1500 SCAR 0.00 (cM) Automated name-based View Maps
E-AAC/M-CAA-75/5 AFLP 23.40 Quercus robur - QTL_3PxA4_2008_Hypoxie - LG6F E-AAC/M-CAA-75/5 AFLP 23.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG6F E-AAC/M-CAA-75/5 AFLP 23.40 (cM) Automated name-based View Maps
E-AAC/M-CAA-339/4 AFLP 39.40 Quercus robur - QTL_3PxA4_2008_CO2_response - LG6F E-AAC/M-CAA-339/4 AFLP 39.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG6F E-AAC/M-CAA-339/4 AFLP 39.40 (cM) Automated name-based View Maps
E-AAC/M-CTT-217/1 AFLP 82.70 Quercus robur - QTL_3PxA4_2008_Hypoxie - LG6F E-AAC/M-CTT-217/1 AFLP 82.70 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG6F E-AAC/M-CTT-217/1 AFLP 82.70 (cM) Automated name-based View Maps
HRf QTL 9.00 - 79.00 Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG8M HRf QTL 20.00 - 80.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG6M HRf QTL 7.00 - 57.90 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG12F HRf QTL 0.00 - 46.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph2 - LG12F HRf QTL 5.70 - 29.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG1F HRf QTL 11.00 - 59.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG1M HRf QTL 24.00 - 44.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph2 - LG1M HRf QTL 17.90 - 43.70 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG5M HRf QTL 46.00 - 114.60 (cM) Automated name-based View Maps
CQM13 gSSR 51.80 Quercus robur - QTL_3PxA4_2008_Hypoxie - LG6F CQM13 gSSR 51.80 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6F CQM13 gSSR 35.48 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG6 CQM13 gSSR 29.90 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6M CQM13 gSSR 39.76 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 CQM13 gSSR 42.11 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6F CQM13 gSSR 24.89 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6F CQM13 gSSR 32.47 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M CQM13 gSSR 33.56 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F CQM13 gSSR 28.93 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6M CQM13 gSSR 39.69 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG6F CQM13 gSSR 51.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M CQM13 gSSR 25.42 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M CQM13 gSSR 40.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6M CQM13 gSSR 56.52 (cM) Automated name-based View Maps
ZQP64 gSSR 32.80 Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6M ZQP64 gSSR 15.46 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6M ZQP64 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6M ZQP64 gSSR 76.36 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F ZQP64 gSSR 8.64 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6F ZQP64 gSSR 36.25 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6F ZQP64 gSSR 53.40 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6M ZQP64 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6F ZQP64 gSSR 15.88 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6M ZQP64 gSSR 52.24 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M ZQP64 gSSR 15.85 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6M ZQP64 gSSR 57.90 (cM) Automated name-based View Maps
ZQR5b gSSR 68.40 Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6F ZQR5b gSSR 68.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG6F ZQR5b gSSR 68.40 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG6F ZQR5b gSSR 68.40 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6F ZQR5b gSSR 68.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG6F ZQR5b gSSR 68.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6F ZQR5b gSSR 34.68 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6F ZQR5b gSSR 12.07 (cM) Automated name-based View Maps

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