CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Castanea sativa-QTL_BursaxHoppa_2009_Bud_pheno  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG2F
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
gSSR
Isozyme
QTL
RAPD
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: QTL [ View Map Type Info ]
Map Set Name: Castanea sativa - QTL_BursaxHoppa_2009_Bud_phenology [ View Map Set Info ]
Map Name: LG2F
Map Start: 0.00 cM
Map Stop: 108.00 cM
Features by Type:
1 Isozyme
8 RAPD
1 QTL
3 gSSR
13 Total

Map Features

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Items 1 to 13 of 13.
Castanea sativa - QTL_BursaxHoppa_2009_Bud_phenology - LG2F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
*X20-984/2dcs RAPD 0.00 No other positions
*C9-820/1cs RAPD 39.20 No other positions
*E6-943/2cs RAPD 51.70 No other positions
*F5-523/1cs RAPD 59.00 No other positions
*K9-959/1cs RAPD 64.40 No other positions
*DIA Isozyme 74.30 Castanea sativa - Genetic_BursaxHoppa_2009 - LG2F *DIA Isozyme 8.29 (cM) Automated name-based View Maps
*Z19-615/1cs RAPD 76.50 No other positions
TCS17 gSSR 78.80 Castanea sativa - Genetic_BursaxHoppa_2009 - LG2M TCS17 gSSR 44.20 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG2F TCS17 gSSR 6.75 (cM) Automated name-based View Maps
TCS14 gSSR 81.10 Quercus robur - Genetic_3PxA4_2007 - LG4M TCS14 gSSR 87.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG4F TCS14 gSSR 0.00 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG2F TCS14 gSSR 4.06 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG4Mb TCS14 gSSR 29.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG4Ma TCS14 gSSR 23.77 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG4Fa TCS14 gSSR 12.24 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG2M TCS14 gSSR 40.94 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG4M TCS14 gSSR 12.65 (cM) Automated name-based View Maps
*I881-1784/1cs RAPD 84.60 No other positions
ZQR5 gSSR 92.10 Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG8F ZQR5 gSSR 72.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG8Ma ZQR5 gSSR 24.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6M ZQR5 gSSR 41.85 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG2F ZQR5 gSSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG8F ZQR5 gSSR 14.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6F ZQR5 gSSR 16.30 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6F ZQR5 gSSR 40.99 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG8M ZQR5 gSSR 43.21 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG8F ZQR5 gSSR 72.57 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F ZQR5 gSSR 17.77 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG8M ZQR5 gSSR 43.21 (cM) Automated name-based View Maps
*B10-1599/1dcs RAPD 108.00 No other positions
Budset QTL 37.00 - 95.00 Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG9M Budset QTL 17.00 - 27.00 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG6M Budset QTL 27.00 - 69.00 (cM) Automated name-based View Maps

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