CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1M
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2011 [ View Map Set Info ]
Map Name: LG1M
Map Start: 0.00 cM
Map Stop: 92.57 cM
Features by Type:
10 EST_SSR
10 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 10 of 10.
Quercus robur - Genetic_3PxA4_2011 - LG1M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
WAG011 EST_SSR 0.00 Quercus robur - Genetic_3PxA4_2009 - LG1M WAG011 EST_SSR 86.68 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG1 WAG011 EST_SSR 53.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG1F WAG011 EST_SSR 59.13 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1M WAG011 EST_SSR 50.49 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG1M WAG011 EST_SSR 1.81 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG1M WAG011 EST_SSR 1.99 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG1F WAG011 EST_SSR 60.87 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1F WAG011 EST_SSR 55.99 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1F WAG011 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG1 WAG011 EST_SSR 75.56 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1Fb WAG011 EST_SSR 7.74 (cM) Automated name-based View Maps
FIR019 EST_SSR 14.44 Quercus robur - Genetic_AltFxAltM_2011 - LG1M FIR019 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG1 FIR019 EST_SSR 84.38 (cM) Automated name-based View Maps
FIR001 EST_SSR 18.73 No other positions
FIR039 EST_SSR 37.40 Castanea sativa - Genetic_BursaxHoppa_2009 - LG6F FIR039 EST_SSR 34.86 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG6M FIR039 EST_SSR 20.37 (cM) Automated name-based View Maps
GOT017 EST_SSR 52.11 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1M GOT017 EST_SSR 24.64 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1F GOT017 EST_SSR 31.96 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG12M GOT017 EST_SSR 2.18 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG1 GOT017 EST_SSR 27.29 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG1F GOT017 EST_SSR 29.61 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1Fa GOT017 EST_SSR 33.61 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG1M GOT017 EST_SSR 47.36 (cM) Automated name-based View Maps
FIR028 EST_SSR 66.22 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1F FIR028 EST_SSR 24.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG1 FIR028 EST_SSR 20.98 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG1 FIR028 EST_SSR 39.68 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG1F FIR028 EST_SSR 10.06 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG1F FIR028 EST_SSR 38.14 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG1M FIR028 EST_SSR 28.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG1M FIR028 EST_SSR 29.32 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG6M FIR028 EST_SSR 49.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1F FIR028 EST_SSR 58.14 (cM) Automated name-based View Maps
PIE238 EST_SSR 77.31 Quercus robur - Genetic_Robur_Consensus_2011 - LG1 PIE238 EST_SSR 43.59 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1F PIE238 EST_SSR 23.82 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG1 PIE238 EST_SSR 20.24 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG1M PIE238 EST_SSR 29.26 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1M PIE238 EST_SSR 44.79 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1F PIE238 EST_SSR 44.11 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG1F PIE238 EST_SSR 8.90 (cM) Automated name-based View Maps
GOT011 EST_SSR 87.57 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1M GOT011 EST_SSR 62.14 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1F GOT011 EST_SSR 8.25 (cM) Automated name-based View Maps
FIR073 EST_SSR 92.57 Quercus petraea - Genetic_Qs28xQs21_2009 - LG1M FIR073 EST_SSR 45.64 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1F FIR073 EST_SSR 40.08 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1F FIR073 EST_SSR 17.98 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG1F FIR073 EST_SSR 50.36 (cM) Automated name-based View Maps
POR002 EST_SSR 4.14 Quercus robur - Genetic_3PxA4_2009 - LG1F POR002 EST_SSR 56.02 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG1 POR002 EST_SSR 71.65 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG1M POR002 EST_SSR 81.56 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG6F POR002 EST_SSR 28.84 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1F POR002 EST_SSR 4.68 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1M POR002 EST_SSR 11.09 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG6M POR002 EST_SSR 8.37 (cM) Automated name-based View Maps

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