CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG5Fa
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2011 [ View Map Set Info ]
Map Name: LG5Fa
Map Start: 0.00 cM
Map Stop: 29.88 cM
Features by Type:
1 gSSR
6 EST_SSR
7 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 7 of 7.
Quercus robur - Genetic_3PxA4_2011 - LG5Fa
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
POR014 EST_SSR 0.00 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5Mb POR014 EST_SSR 16.24 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5Mb POR014 EST_SSR 10.45 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5F POR014 EST_SSR 2.34 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5F POR014 EST_SSR 42.84 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5Ma POR014 EST_SSR 17.67 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5Ma POR014 EST_SSR 16.75 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG5 POR014 EST_SSR 45.73 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG5 POR014 EST_SSR 30.20 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5F POR014 EST_SSR 43.72 (cM) Automated name-based View Maps
FIR125 EST_SSR 4.32 Quercus robur - Genetic_AltFxAltM_2009 - LG2M FIR125 EST_SSR 37.34 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M FIR125 EST_SSR 65.91 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG2 FIR125 EST_SSR 60.73 (cM) Automated name-based View Maps
FIR035 EST_SSR 10.03 Quercus robur - Genetic_Robur_Consensus_2011 - LG5 FIR035 EST_SSR 0.00 (cM) Automated name-based View Maps
PIE013 EST_SSR 18.28 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5Mb PIE013 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F PIE013 EST_SSR 72.48 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5F PIE013 EST_SSR 62.81 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5M PIE013 EST_SSR 90.47 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG5 PIE013 EST_SSR 12.12 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG5 PIE013 EST_SSR 64.24 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5Ma PIE013 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5Ma PIE013 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5Mb PIE013 EST_SSR 26.46 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Mb PIE013 EST_SSR 3.88 (cM) Automated name-based View Maps
GOT037 EST_SSR 20.08 Quercus petraea - Genetic_Qs28xQs21_2011 - LG5Ma GOT037 EST_SSR 3.71 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5Ma GOT037 EST_SSR 3.54 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Mb GOT037 EST_SSR 0.00 (cM) Automated name-based View Maps
ZQP58 gSSR 24.38 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG5M ZQP58 gSSR 101.50 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5F ZQP58 gSSR 71.24 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F ZQP58 gSSR 67.38 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5M ZQP58 gSSR 84.68 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5Ma ZQP58 gSSR 5.86 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG5F ZQP58 gSSR 8.34 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG5F ZQP58 gSSR 97.11 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG5F ZQP58 gSSR 36.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG5F ZQP58 gSSR 97.11 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG10M ZQP58 gSSR 96.83 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG5F ZQP58 gSSR 6.36 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG5M ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5M ZQP58 gSSR 8.33 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG5F ZQP58 gSSR 0.00 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG4M ZQP58 gSSR 22.10 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG5F ZQP58 gSSR 10.50 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG5M ZQP58 gSSR 101.50 (cM) Automated name-based View Maps
FIR053 EST_SSR 29.88 Quercus robur - Genetic_3PxA4_2009 - LG5M FIR053 EST_SSR 36.95 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Ma FIR053 EST_SSR 14.46 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F FIR053 EST_SSR 49.39 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5M FIR053 EST_SSR 35.42 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5F FIR053 EST_SSR 42.63 (cM) Automated name-based View Maps

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