CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG5Fb
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2011 [ View Map Set Info ]
Map Name: LG5Fb
Map Start: 0.00 cM
Map Stop: 38.29 cM
Features by Type:
1 gSSR
5 EST_SSR
6 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 6 of 6.
Quercus robur - Genetic_3PxA4_2011 - LG5Fb
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
POR030 EST_SSR 17.82 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5M POR030 EST_SSR 75.27 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F POR030 EST_SSR 24.06 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5F POR030 EST_SSR 32.82 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5Mb POR030 EST_SSR 13.06 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5F POR030 EST_SSR 25.58 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG5 POR030 EST_SSR 56.44 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5F POR030 EST_SSR 12.45 (cM) Automated name-based View Maps
PIE246 EST_SSR 23.97 Quercus petraea - Genetic_Qs28xQs21_2011 - LG5Mb PIE246 EST_SSR 14.68 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5Mb PIE246 EST_SSR 1.27 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5M PIE246 EST_SSR 27.27 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F PIE246 EST_SSR 20.55 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5M PIE246 EST_SSR 77.92 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5F PIE246 EST_SSR 18.48 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG5 PIE246 EST_SSR 17.42 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Ma PIE246 EST_SSR 8.44 (cM) Automated name-based View Maps
PIE201 EST_SSR 26.32 Quercus robur - Genetic_Robur_Consensus_2011 - LG5 PIE201 EST_SSR 63.07 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5M PIE201 EST_SSR 18.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5F PIE201 EST_SSR 10.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Ma PIE201 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG5F PIE201 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG5F PIE201 EST_SSR 37.57 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5Ma PIE201 EST_SSR 1.73 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5F PIE201 EST_SSR 19.96 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F PIE201 EST_SSR 14.80 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5Ma PIE201 EST_SSR 6.96 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5M PIE201 EST_SSR 79.02 (cM) Automated name-based View Maps
ZQR39 gSSR 38.29 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5Ma ZQR39 gSSR 25.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5F ZQR39 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5F ZQR39 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG5M ZQR39 gSSR 96.58 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG5M ZQR39 gSSR 107.39 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG5M ZQR39 gSSR 80.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG5 ZQR39 gSSR 76.75 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG5M ZQR39 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG5F ZQR39 gSSR 95.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG5F ZQR39 gSSR 95.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG5F ZQR39 gSSR 95.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG5 ZQR39 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG5F ZQR39 gSSR 95.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG5M ZQR39 gSSR 80.90 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG5M ZQR39 gSSR 80.90 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG5F ZQR39 gSSR 95.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG5M ZQR39 gSSR 80.90 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG5M ZQR39 gSSR 80.90 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG5F ZQR39 gSSR 80.78 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG5M ZQR39 gSSR 76.27 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5F ZQR39 gSSR 30.88 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG5M ZQR39 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG5M ZQR39 gSSR 80.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG5F ZQR39 gSSR 73.04 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG5F ZQR39 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG5M ZQR39 gSSR 81.00 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG5F ZQR39 gSSR 95.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F ZQR39 gSSR 5.61 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5Ma ZQR39 gSSR 29.13 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG5M ZQR39 gSSR 81.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG5F ZQR39 gSSR 0.00 (cM) Automated name-based View Maps
FIR106 EST_SSR 0.00 Quercus robur - Genetic_Robur_Consensus_2011 - LG5 FIR106 EST_SSR 39.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F FIR106 EST_SSR 34.90 (cM) Automated name-based View Maps
WAG017 EST_SSR 3.63 Quercus robur - Genetic_AltFxAltM_2009 - LG5F WAG017 EST_SSR 33.84 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5F WAG017 EST_SSR 20.26 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5F WAG017 EST_SSR 12.76 (cM) Automated name-based View Maps

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