CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_3PxA4_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6M
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_3PxA4_2011 [ View Map Set Info ]
Map Name: LG6M
Map Start: 0.00 cM
Map Stop: 71.62 cM
Features by Type:
12 EST_SSR
2 gSSR
14 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 14 of 14.
Quercus robur - Genetic_3PxA4_2011 - LG6M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
FIR027 EST_SSR 2.29 Quercus robur - Genetic_Robur_Consensus_2011 - LG6 FIR027 EST_SSR 70.31 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG6F FIR027 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M FIR027 EST_SSR 0.00 (cM) Automated name-based View Maps
POR027 EST_SSR 11.12 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M POR027 EST_SSR 21.13 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M POR027 EST_SSR 52.84 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 POR027 EST_SSR 63.54 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6F POR027 EST_SSR 7.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M POR027 EST_SSR 8.16 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M POR027 EST_SSR 10.64 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F POR027 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6M POR027 EST_SSR 57.29 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6F POR027 EST_SSR 39.54 (cM) Automated name-based View Maps
ZQP64 gSSR 15.46 Quercus robur - QTL_3PxA4_2008_Hypoxie - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6M ZQP64 gSSR 52.24 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6M ZQP64 gSSR 76.36 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6F ZQP64 gSSR 15.88 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6M ZQP64 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6M ZQP64 gSSR 57.90 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M ZQP64 gSSR 15.85 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F ZQP64 gSSR 8.64 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6F ZQP64 gSSR 32.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6F ZQP64 gSSR 36.25 (cM) Automated name-based View Maps
MSQ13 gSSR 21.10 Quercus robur - Genetic_3PxA4_2011 - LG6F MSQ13 gSSR 17.87 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6F MSQ13 gSSR 51.80 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6F MSQ13 gSSR 51.80 (cM) Automated name-based View Maps
FIR110 EST_SSR 29.14 Quercus robur - Genetic_Robur_Consensus_2011 - LG6 FIR110 EST_SSR 42.87 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F FIR110 EST_SSR 25.12 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M FIR110 EST_SSR 30.10 (cM) Automated name-based View Maps
PIE035 EST_SSR 32.26 Quercus robur - Genetic_Robur_Consensus_2011 - LG6 PIE035 EST_SSR 39.99 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F PIE035 EST_SSR 25.48 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG6F PIE035 EST_SSR 20.48 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6M PIE035 EST_SSR 24.23 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M PIE035 EST_SSR 40.77 (cM) Automated name-based View Maps
WAG002 EST_SSR 41.07 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M WAG002 EST_SSR 36.89 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M WAG002 EST_SSR 38.46 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F WAG002 EST_SSR 35.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 WAG002 EST_SSR 35.39 (cM) Automated name-based View Maps
PIE111 EST_SSR 50.77 No other positions
POR012 EST_SSR 54.79 Quercus robur - Genetic_3PxA4_2011 - LG6F POR012 EST_SSR 53.10 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M POR012 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6M POR012 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 POR012 EST_SSR 19.51 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M POR012 EST_SSR 64.86 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M POR012 EST_SSR 72.90 (cM) Automated name-based View Maps
PIE260 EST_SSR 57.98 Quercus petraea - Genetic_Qs28xQs21_2011 - LG6M PIE260 EST_SSR 7.82 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M PIE260 EST_SSR 52.32 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M PIE260 EST_SSR 8.82 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F PIE260 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6F PIE260 EST_SSR 53.07 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG6F PIE260 EST_SSR 40.26 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M PIE260 EST_SSR 65.16 (cM) Automated name-based View Maps
WAG018 EST_SSR 59.62 Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M WAG018 EST_SSR 56.12 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F WAG018 EST_SSR 54.68 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 WAG018 EST_SSR 14.17 (cM) Automated name-based View Maps
GOT040 EST_SSR 62.00 Quercus petraea - Genetic_Qs28xQs21_2011 - LG6M GOT040 EST_SSR 5.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 GOT040 EST_SSR 15.83 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F GOT040 EST_SSR 56.46 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6F GOT040 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M GOT040 EST_SSR 57.65 (cM) Automated name-based View Maps
FIR021 EST_SSR 71.62 Quercus petraea - Genetic_Qs28xQs21_2011 - LG6F FIR021 EST_SSR 2.76 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F FIR021 EST_SSR 51.51 (cM) Automated name-based View Maps
POR018 EST_SSR 4.40 Quercus robur - Genetic_Robur_Consensus_2011 - LG6 POR018 EST_SSR 68.16 (cM) Automated name-based View Maps

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