CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_11PxQs29_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG5Mb
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 [ View Map Set Info ]
Map Name: LG5Mb
Map Start: 0.00 cM
Map Stop: 26.46 cM
Features by Type:
1 gSSR
4 EST_SSR
5 Total

Map Features

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[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 5 of 5.
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5Mb
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PQRu16 EST_SSR 0.00 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG5 PQRu16 EST_SSR 36.13 (cM) Automated name-based View Maps
POR014 EST_SSR 10.45 Quercus petraea - Genetic_Qs28xQs21_2009 - LG5Ma POR014 EST_SSR 17.67 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5Mb POR014 EST_SSR 16.24 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5F POR014 EST_SSR 2.34 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Fa POR014 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG5 POR014 EST_SSR 45.73 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5F POR014 EST_SSR 42.84 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5Ma POR014 EST_SSR 16.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG5 POR014 EST_SSR 30.20 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5F POR014 EST_SSR 43.72 (cM) Automated name-based View Maps
ZQP1/2 gSSR 16.21 Quercus robur - Genetic_AltFxAltM_2011 - LG7M ZQP1/2 gSSR 68.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG7F ZQP1/2 gSSR 21.48 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5Mb ZQP1/2 gSSR 10.12 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG5 ZQP1/2 gSSR 54.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG7F ZQP1/2 gSSR 16.44 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG5 ZQP1/2 gSSR 23.85 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5F ZQP1/2 gSSR 55.92 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5F ZQP1/2 gSSR 50.11 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG7M ZQP1/2 gSSR 18.10 (cM) Automated name-based View Maps
WAG043 EST_SSR 25.68 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5Mb WAG043 EST_SSR 0.78 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG5F WAG043 EST_SSR 59.48 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Mb WAG043 EST_SSR 0.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG5 WAG043 EST_SSR 14.52 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5Ma WAG043 EST_SSR 6.06 (cM) Automated name-based View Maps
PIE013 EST_SSR 26.46 Quercus petraea - Genetic_Qs28xQs21_2011 - LG5Ma PIE013 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG5Mb PIE013 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG5Ma PIE013 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5F PIE013 EST_SSR 72.48 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Mb PIE013 EST_SSR 3.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG5 PIE013 EST_SSR 12.12 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG5M PIE013 EST_SSR 90.47 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG5Fa PIE013 EST_SSR 18.28 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG5F PIE013 EST_SSR 62.81 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG5 PIE013 EST_SSR 64.24 (cM) Automated name-based View Maps

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