CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_AltFxAltM_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG2F
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_AltFxAltM_2011 [ View Map Set Info ]
Map Name: LG2F
Map Start: 0.00 cM
Map Stop: 59.20 cM
Features by Type:
1 gSSR
9 EST_SSR
10 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 10 of 10.
Quercus robur - Genetic_AltFxAltM_2011 - LG2F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
FIR013 EST_SSR 0.00 Quercus robur - Genetic_3PxA4_2011 - LG2Fb FIR013 EST_SSR 18.67 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG2F FIR013 EST_SSR 30.49 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M FIR013 EST_SSR 86.49 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG2M FIR013 EST_SSR 18.40 (cM) Automated name-based View Maps
ZQP104 gSSR 2.42 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 ZQP104 gSSR 53.93 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG2M ZQP104 gSSR 35.32 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb ZQP104 gSSR 43.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG2 ZQP104 gSSR 44.53 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2M ZQP104 gSSR 32.81 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG2F ZQP104 gSSR 29.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M ZQP104 gSSR 85.39 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2F ZQP104 gSSR 37.04 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2F ZQP104 gSSR 21.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2F ZQP104 gSSR 37.21 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG2M ZQP104 gSSR 35.32 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG2F ZQP104 gSSR 29.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG2M ZQP104 gSSR 19.48 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG2F ZQP104 gSSR 32.93 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG2M ZQP104 gSSR 60.98 (cM) Automated name-based View Maps
FIR112 EST_SSR 3.85 Quercus robur - Genetic_AltFxAltM_2009 - LG2M FIR112 EST_SSR 26.49 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fb FIR112 EST_SSR 38.16 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M FIR112 EST_SSR 77.05 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2Ma FIR112 EST_SSR 35.48 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb FIR112 EST_SSR 35.49 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2M FIR112 EST_SSR 58.41 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 FIR112 EST_SSR 50.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG2F FIR112 EST_SSR 34.38 (cM) Automated name-based View Maps
PIE136 EST_SSR 7.74 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2M PIE136 EST_SSR 51.49 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2F PIE136 EST_SSR 24.83 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG2F PIE136 EST_SSR 74.45 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG2F PIE136 EST_SSR 38.27 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2F PIE136 EST_SSR 25.08 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG2F PIE136 EST_SSR 49.11 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M PIE136 EST_SSR 58.98 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Ma PIE136 EST_SSR 45.56 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2F PIE136 EST_SSR 6.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fb PIE136 EST_SSR 67.34 (cM) Automated name-based View Maps
FIR048 EST_SSR 11.08 Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb FIR048 EST_SSR 24.45 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fb FIR048 EST_SSR 62.36 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2Ma FIR048 EST_SSR 24.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG2F FIR048 EST_SSR 41.61 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2F FIR048 EST_SSR 59.52 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2M FIR048 EST_SSR 46.29 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2F FIR048 EST_SSR 26.41 (cM) Automated name-based View Maps
PIE151 EST_SSR 18.26 Quercus robur - Genetic_AltFxAltM_2009 - LG2F PIE151 EST_SSR 48.90 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2M PIE151 EST_SSR 55.52 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2F PIE151 EST_SSR 17.85 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2Ma PIE151 EST_SSR 10.95 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2F PIE151 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M PIE151 EST_SSR 46.68 (cM) Automated name-based View Maps
FIR032 EST_SSR 22.97 Quercus robur - Genetic_AltFxAltM_2009 - LG2F FIR032 EST_SSR 53.48 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG2M FIR032 EST_SSR 59.54 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M FIR032 EST_SSR 37.76 (cM) Automated name-based View Maps
WAG074 EST_SSR 40.84 Quercus robur - Genetic_AltFxAltM_2011 - LG2M WAG074 EST_SSR 20.85 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG2F WAG074 EST_SSR 87.65 (cM) Automated name-based View Maps
PIE197 EST_SSR 56.73 Quercus robur - Genetic_AltFxAltM_2009 - LG2F PIE197 EST_SSR 73.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 PIE197 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG2 PIE197 EST_SSR 103.88 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2M PIE197 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2F PIE197 EST_SSR 98.02 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Ma PIE197 EST_SSR 4.01 (cM) Automated name-based View Maps
PIE171 EST_SSR 59.20 Quercus robur - Genetic_AltFxAltM_2011 - LG2M PIE171 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG2 PIE171 EST_SSR 106.48 (cM) Automated name-based View Maps

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