CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus robur subsp. slavonica-Genetic_EF03xSL03_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1M
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 [ View Map Set Info ]
Map Name: LG1M
Map Start: 0.00 cM
Map Stop: 68.89 cM
Features by Type:
1 gSSR
7 EST_SSR
8 Total

Map Features

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Items 1 to 8 of 8.
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
FIR040 EST_SSR 0.00 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1F FIR040 EST_SSR 63.11 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG1 FIR040 EST_SSR 80.14 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1Fb FIR040 EST_SSR 16.25 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1F FIR040 EST_SSR 57.34 (cM) Automated name-based View Maps
POR002 EST_SSR 11.09 Quercus robur - Genetic_Robur_Consensus_2011 - LG1 POR002 EST_SSR 71.65 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1F POR002 EST_SSR 4.68 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1M POR002 EST_SSR 4.14 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG6F POR002 EST_SSR 28.84 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG6M POR002 EST_SSR 8.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG1M POR002 EST_SSR 81.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG1F POR002 EST_SSR 56.02 (cM) Automated name-based View Maps
GOT009 EST_SSR 32.56 Quercus petraea - Genetic_Qs28xQs21_2011 - LG12M GOT009 EST_SSR 40.13 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG1 GOT009 EST_SSR 7.33 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG12M GOT009 EST_SSR 4.19 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG12 GOT009 EST_SSR 2.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12M GOT009 EST_SSR 3.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1M GOT009 EST_SSR 11.47 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1F GOT009 EST_SSR 33.17 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG12 GOT009 EST_SSR 3.66 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG12F GOT009 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG1 GOT009 EST_SSR 53.08 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG12M GOT009 EST_SSR 18.58 (cM) Automated name-based View Maps
POR040 EST_SSR 37.71 Quercus robur - Genetic_Robur_Consensus_2011 - LG1 POR040 EST_SSR 48.18 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1F POR040 EST_SSR 28.95 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG1 POR040 EST_SSR 28.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG1F POR040 EST_SSR 25.26 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG1M POR040 EST_SSR 22.83 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG1F POR040 EST_SSR 27.09 (cM) Automated name-based View Maps
PIE238 EST_SSR 44.79 Quercus robur - Genetic_3PxA4_2011 - LG1F PIE238 EST_SSR 44.11 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG1F PIE238 EST_SSR 8.90 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1F PIE238 EST_SSR 23.82 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG1M PIE238 EST_SSR 29.26 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1M PIE238 EST_SSR 77.31 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG1 PIE238 EST_SSR 43.59 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG1 PIE238 EST_SSR 20.24 (cM) Automated name-based View Maps
GOT011 EST_SSR 62.14 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1F GOT011 EST_SSR 8.25 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1M GOT011 EST_SSR 87.57 (cM) Automated name-based View Maps
PIE020 EST_SSR 66.57 Quercus robur - Genetic_3PxA4_2011 - LG11Ma PIE020 EST_SSR 6.08 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG1F PIE020 EST_SSR 50.24 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG1 PIE020 EST_SSR 24.28 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG1M PIE020 EST_SSR 45.97 (cM) Automated name-based View Maps
ZQR101 gSSR 68.89 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG1F ZQR101 gSSR 67.76 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG1F ZQR101 gSSR 50.27 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG1F ZQR101 gSSR 27.78 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG1F ZQR101 gSSR 68.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG1F ZQR101 gSSR 68.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG1M ZQR101 gSSR 74.09 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG1F ZQR101 gSSR 68.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG1F ZQR101 gSSR 33.41 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph2 - LG1F ZQR101 gSSR 69.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG1F ZQR101 gSSR 49.79 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG1 ZQR101 gSSR 1.33 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG1F ZQR101 gSSR 1.78 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG1 ZQR101 gSSR 27.41 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph1 - LG1F ZQR101 gSSR 69.70 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG1F ZQR101 gSSR 68.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG1M ZQR101 gSSR 46.18 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG1F ZQR101 gSSR 3.27 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG1F ZQR101 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1Fa ZQR101 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG1F ZQR101 gSSR 67.76 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG1F ZQR101 gSSR 68.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1F ZQR101 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG1F ZQR101 gSSR 68.00 (cM) Automated name-based View Maps

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