CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus robur subsp. slavonica-Genetic_EF03xSL03_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG3F
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 [ View Map Set Info ]
Map Name: LG3F
Map Start: 0.00 cM
Map Stop: 59.88 cM
Features by Type:
1 gSSR
6 EST_SSR
7 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 7 of 7.
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
FIR004 EST_SSR 0.00 Quercus robur - Genetic_3PxA4_2011 - LG3Fa FIR004 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 FIR004 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Ma FIR004 EST_SSR 0.00 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG11F FIR004 EST_SSR 15.59 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG3M FIR004 EST_SSR 0.00 (cM) Automated name-based View Maps
PIE075 EST_SSR 3.45 Quercus robur - Genetic_Robur_Consensus_2011 - LG3 PIE075 EST_SSR 4.07 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3M PIE075 EST_SSR 60.09 (cM) Automated name-based View Maps
ZQR102 gSSR 17.71 Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG3M ZQR102 gSSR 17.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG3M ZQR102 gSSR 29.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Ma ZQR102 gSSR 29.02 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG3F ZQR102 gSSR 71.65 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG3F ZQR102 gSSR 71.65 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG3M ZQR102 gSSR 17.30 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG3M ZQR102 gSSR 17.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG3M ZQR102 gSSR 17.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Debourrement - LG3M ZQR102 gSSR 17.30 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_CO2_response - LG3M ZQR102 gSSR 17.40 (cM) Automated name-based View Maps
Quercus robur - MutliQTL_3PxA4_2009_Senescence - LG3M ZQR102 gSSR 17.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG3M ZQR102 gSSR 21.90 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG3M ZQR102 gSSR 17.40 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph1 - LG3M ZQR102 gSSR 20.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph2 - LG3M ZQR102 gSSR 20.80 (cM) Automated name-based View Maps
FIR075 EST_SSR 30.61 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3M FIR075 EST_SSR 42.72 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fa FIR075 EST_SSR 23.02 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3M FIR075 EST_SSR 30.58 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG5M FIR075 EST_SSR 3.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Ma FIR075 EST_SSR 38.96 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG5F FIR075 EST_SSR 1.45 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3F FIR075 EST_SSR 29.37 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG3 FIR075 EST_SSR 34.95 (cM) Automated name-based View Maps
PIE021 EST_SSR 33.91 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3M PIE021 EST_SSR 39.95 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 PIE021 EST_SSR 29.18 (cM) Automated name-based View Maps
POR011 EST_SSR 40.77 Quercus robur - Genetic_Robur_Consensus_2011 - LG3 POR011 EST_SSR 38.26 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG8M POR011 EST_SSR 25.69 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG3Mb POR011 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3M POR011 EST_SSR 36.31 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3F POR011 EST_SSR 39.60 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3M POR011 EST_SSR 29.67 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG3F POR011 EST_SSR 32.26 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG3M POR011 EST_SSR 38.34 (cM) Automated name-based View Maps
PIE242 EST_SSR 59.88 Quercus robur - Genetic_3PxA4_2011 - LG3Ma PIE242 EST_SSR 68.27 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG3M PIE242 EST_SSR 47.72 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3M PIE242 EST_SSR 45.47 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3M PIE242 EST_SSR 11.11 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG3 PIE242 EST_SSR 19.14 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3F PIE242 EST_SSR 45.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 PIE242 EST_SSR 55.17 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fa PIE242 EST_SSR 41.32 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG3Mb PIE242 EST_SSR 0.00 (cM) Automated name-based View Maps

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