CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus robur subsp. slavonica-Genetic_EF03xSL03_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6M
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 [ View Map Set Info ]
Map Name: LG6M
Map Start: 0.00 cM
Map Stop: 55.17 cM
Features by Type:
1 gSSR
9 EST_SSR
10 Total

Map Features

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[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 10 of 10.
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG6M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
GOT040 EST_SSR 0.00 Quercus robur - Genetic_3PxA4_2011 - LG6F GOT040 EST_SSR 56.46 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M GOT040 EST_SSR 57.65 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6M GOT040 EST_SSR 62.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6F GOT040 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG6 GOT040 EST_SSR 58.09 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6M GOT040 EST_SSR 5.80 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG6F GOT040 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 GOT040 EST_SSR 15.83 (cM) Automated name-based View Maps
POR046 EST_SSR 4.51 No other positions
PIE255 EST_SSR 12.03 No other positions
FIR110 EST_SSR 19.78 Castanea sativa - Genetic_BursaxHoppa_2009 - LG11F FIR110 EST_SSR 32.46 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F FIR110 EST_SSR 25.12 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M FIR110 EST_SSR 30.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 FIR110 EST_SSR 42.87 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG11M FIR110 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6M FIR110 EST_SSR 29.14 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG6F FIR110 EST_SSR 27.45 (cM) Automated name-based View Maps
POR017 EST_SSR 31.39 Quercus petraea - Genetic_Qs28xQs21_2009 - LG6F POR017 EST_SSR 25.97 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M POR017 EST_SSR 31.26 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6F POR017 EST_SSR 22.36 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F POR017 EST_SSR 13.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M POR017 EST_SSR 26.56 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG6F POR017 EST_SSR 33.54 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 POR017 EST_SSR 50.98 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG6 POR017 EST_SSR 25.64 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M POR017 EST_SSR 43.41 (cM) Automated name-based View Maps
PIE069 EST_SSR 32.89 Quercus robur - Genetic_Robur_Consensus_2011 - LG6 PIE069 EST_SSR 52.54 (cM) Automated name-based View Maps
ZQP16 gSSR 38.01 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG6F ZQP16 gSSR 38.38 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG6M ZQP16 gSSR 45.37 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG6F ZQP16 gSSR 59.49 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG6M ZQP16 gSSR 45.37 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F ZQP16 gSSR 45.11 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M ZQP16 gSSR 10.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 ZQP16 gSSR 57.64 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6F ZQP16 gSSR 40.84 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG6 ZQP16 gSSR 15.61 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6F ZQP16 gSSR 16.03 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG6F ZQP16 gSSR 59.49 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6F ZQP16 gSSR 16.88 (cM) Automated name-based View Maps
FIR027 EST_SSR 48.72 Quercus robur - Genetic_AltFxAltM_2011 - LG6F FIR027 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 FIR027 EST_SSR 70.31 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG6F FIR027 EST_SSR 40.27 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M FIR027 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6M FIR027 EST_SSR 2.29 (cM) Automated name-based View Maps
POR018 EST_SSR 51.26 Quercus robur - Genetic_Robur_Consensus_2011 - LG6 POR018 EST_SSR 68.16 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6M POR018 EST_SSR 4.40 (cM) Automated name-based View Maps
PIE071 EST_SSR 55.17 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6F PIE071 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M PIE071 EST_SSR 73.77 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 PIE071 EST_SSR 74.04 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M PIE071 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG6 PIE071 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6F PIE071 EST_SSR 0.66 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F PIE071 EST_SSR 59.11 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6M PIE071 EST_SSR 68.70 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG6F PIE071 EST_SSR 57.76 (cM) Automated name-based View Maps

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