CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus robur subsp. slavonica-Genetic_EF03xSL03_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG11F
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 [ View Map Set Info ]
Map Name: LG11F
Map Start: 0.00 cM
Map Stop: 49.92 cM
Features by Type:
1 gSSR
4 EST_SSR
5 Total

Map Features

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[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 5 of 5.
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PIE257 EST_SSR 0.00 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11M PIE257 EST_SSR 12.72 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG11F PIE257 EST_SSR 2.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG11F PIE257 EST_SSR 71.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Fb PIE257 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG11F PIE257 EST_SSR 40.86 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1M PIE257 EST_SSR 11.68 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE257 EST_SSR 51.07 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Fa PIE257 EST_SSR 13.52 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG11F PIE257 EST_SSR 42.74 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Ma PIE257 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG11F PIE257 EST_SSR 16.44 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11a PIE257 EST_SSR 16.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Mb PIE257 EST_SSR 15.58 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG11M PIE257 EST_SSR 3.59 (cM) Automated name-based View Maps
PIE040 EST_SSR 31.00 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11M PIE040 EST_SSR 63.58 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE040 EST_SSR 13.48 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG11F PIE040 EST_SSR 8.96 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG11F PIE040 EST_SSR 10.16 (cM) Automated name-based View Maps
ZQR18 gSSR 41.06 Quercus robur - Genetic_Robur_Consensus_2011 - LG11 ZQR18 gSSR 6.61 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Fb ZQR18 gSSR 8.14 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11M ZQR18 gSSR 68.71 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG11F ZQR18 gSSR 119.75 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG11F ZQR18 gSSR 9.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Fb ZQR18 gSSR 25.89 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11b ZQR18 gSSR 11.32 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Fa ZQR18 gSSR 8.49 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG11M ZQR18 gSSR 4.78 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG11M ZQR18 gSSR 4.78 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Mb ZQR18 gSSR 8.26 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Ma ZQR18 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG11F ZQR18 gSSR 9.36 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG11F ZQR18 gSSR 9.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG11M ZQR18 gSSR 90.89 (cM) Automated name-based View Maps
PIE033 EST_SSR 44.65 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11M PIE033 EST_SSR 69.95 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG11F PIE033 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11b PIE033 EST_SSR 3.46 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Fb PIE033 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE033 EST_SSR 4.07 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Fb PIE033 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Fa PIE033 EST_SSR 0.13 (cM) Automated name-based View Maps
PIE004 EST_SSR 49.92 Quercus robur - Genetic_AltFxAltM_2009 - LG11M PIE004 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11b PIE004 EST_SSR 4.08 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Fb PIE004 EST_SSR 8.16 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG11F PIE004 EST_SSR 57.09 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Ma PIE004 EST_SSR 5.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG11F PIE004 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Fa PIE004 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE004 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Mb PIE004 EST_SSR 5.75 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG11F PIE004 EST_SSR 46.68 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11M PIE004 EST_SSR 73.26 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG11F PIE004 EST_SSR 0.00 (cM) Automated name-based View Maps

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