CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus robur subsp. slavonica-Genetic_EF03xSL03_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG11M
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 [ View Map Set Info ]
Map Name: LG11M
Map Start: 0.00 cM
Map Stop: 73.26 cM
Features by Type:
1 gSSR
7 EST_SSR
8 Total

Map Features

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Items 1 to 8 of 8.
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PIE144 EST_SSR 0.00 Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Ma PIE144 EST_SSR 9.19 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Fa PIE144 EST_SSR 12.98 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Fb PIE144 EST_SSR 6.74 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Fa PIE144 EST_SSR 7.01 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Mb PIE144 EST_SSR 8.43 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11a PIE144 EST_SSR 6.79 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1M PIE144 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG11F PIE144 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE144 EST_SSR 60.19 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG11M PIE144 EST_SSR 0.00 (cM) Automated name-based View Maps
PIE257 EST_SSR 12.72 Quercus robur - Genetic_AltFxAltM_2011 - LG11F PIE257 EST_SSR 42.74 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE257 EST_SSR 51.07 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG11M PIE257 EST_SSR 3.59 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Fb PIE257 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11F PIE257 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Fa PIE257 EST_SSR 13.52 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Mb PIE257 EST_SSR 15.58 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG11F PIE257 EST_SSR 16.44 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG1M PIE257 EST_SSR 11.68 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Ma PIE257 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG11F PIE257 EST_SSR 40.86 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG11F PIE257 EST_SSR 2.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11a PIE257 EST_SSR 16.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG11F PIE257 EST_SSR 71.30 (cM) Automated name-based View Maps
PIE036 EST_SSR 35.03 Quercus robur - Genetic_3PxA4_2011 - LG11Mb PIE036 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Fa PIE036 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE036 EST_SSR 36.08 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG11M PIE036 EST_SSR 34.44 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG11F PIE036 EST_SSR 61.91 (cM) Automated name-based View Maps
PIE035 EST_SSR 56.82 Quercus robur - Genetic_Robur_Consensus_2011 - LG6 PIE035 EST_SSR 39.99 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG6F PIE035 EST_SSR 23.71 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6F PIE035 EST_SSR 36.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M PIE035 EST_SSR 40.77 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE035 EST_SSR 18.46 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG6F PIE035 EST_SSR 19.17 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F PIE035 EST_SSR 25.48 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG6F PIE035 EST_SSR 20.48 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6M PIE035 EST_SSR 24.23 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6M PIE035 EST_SSR 32.26 (cM) Automated name-based View Maps
PIE040 EST_SSR 63.58 Quercus robur - Genetic_AltFxAltM_2009 - LG11F PIE040 EST_SSR 8.96 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11F PIE040 EST_SSR 31.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE040 EST_SSR 13.48 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG11F PIE040 EST_SSR 10.16 (cM) Automated name-based View Maps
ZQR18 gSSR 68.71 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG11F ZQR18 gSSR 9.50 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11F ZQR18 gSSR 41.06 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 ZQR18 gSSR 6.61 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG11F ZQR18 gSSR 9.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Ma ZQR18 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG11M ZQR18 gSSR 4.78 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG11M ZQR18 gSSR 4.78 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11b ZQR18 gSSR 11.32 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG11F ZQR18 gSSR 9.36 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG11M ZQR18 gSSR 90.89 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Mb ZQR18 gSSR 8.26 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Fa ZQR18 gSSR 8.49 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG11F ZQR18 gSSR 119.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Fb ZQR18 gSSR 25.89 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Fb ZQR18 gSSR 8.14 (cM) Automated name-based View Maps
PIE033 EST_SSR 69.95 Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Fb PIE033 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Fa PIE033 EST_SSR 0.13 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11F PIE033 EST_SSR 44.65 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11b PIE033 EST_SSR 3.46 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG11F PIE033 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE033 EST_SSR 4.07 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Fb PIE033 EST_SSR 0.00 (cM) Automated name-based View Maps
PIE004 EST_SSR 73.26 Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Mb PIE004 EST_SSR 5.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG11 PIE004 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG11F PIE004 EST_SSR 49.92 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG11b PIE004 EST_SSR 4.08 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG11Ma PIE004 EST_SSR 5.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG11M PIE004 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG11Fa PIE004 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG11F PIE004 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG11F PIE004 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG11Fb PIE004 EST_SSR 8.16 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG11F PIE004 EST_SSR 46.68 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG11F PIE004 EST_SSR 57.09 (cM) Automated name-based View Maps

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