CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus robur subsp. slavonica-Genetic_EF03xSL03_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG12F
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 [ View Map Set Info ]
Map Name: LG12F
Map Start: 0.00 cM
Map Stop: 51.80 cM
Features by Type:
4 EST_SSR
1 gSSR
5 Total

Map Features

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Items 1 to 5 of 5.
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG12F
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
ZQR30 gSSR 0.00 Quercus robur - Genetic_3PxA4_2007 - LG12M ZQR30 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG12M ZQR30 gSSR 57.26 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG12M ZQR30 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG12F ZQR30 gSSR 32.23 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG12M ZQR30 gSSR 45.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12M ZQR30 gSSR 55.94 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG12F ZQR30 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG12M ZQR30 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG12F ZQR30 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG12 ZQR30 gSSR 61.10 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG12F ZQR30 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG12M ZQR30 gSSR 0.00 (cM) Automated name-based View Maps
POR020 EST_SSR 11.08 Quercus petraea - Genetic_Qs28xQs21_2011 - LG12M POR020 EST_SSR 6.12 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12F POR020 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG12M POR020 EST_SSR 57.73 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG12 POR020 EST_SSR 50.48 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12M POR020 EST_SSR 6.78 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG12M POR020 EST_SSR 6.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG12 POR020 EST_SSR 41.07 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F POR020 EST_SSR 14.87 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12M POR020 EST_SSR 43.99 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12M POR020 EST_SSR 7.21 (cM) Automated name-based View Maps
PIE236 EST_SSR 26.32 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12F PIE236 EST_SSR 12.12 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG12F PIE236 EST_SSR 3.67 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG12F PIE236 EST_SSR 48.38 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG12M PIE236 EST_SSR 31.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12F PIE236 EST_SSR 14.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG12 PIE236 EST_SSR 36.27 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG12 PIE236 EST_SSR 29.02 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F PIE236 EST_SSR 30.73 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12M PIE236 EST_SSR 32.81 (cM) Automated name-based View Maps
PIE203 EST_SSR 49.25 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12F PIE203 EST_SSR 28.61 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG12 PIE203 EST_SSR 17.84 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F PIE203 EST_SSR 49.52 (cM) Automated name-based View Maps
FIR008 EST_SSR 51.80 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F FIR008 EST_SSR 55.89 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG12M FIR008 EST_SSR 11.25 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12M FIR008 EST_SSR 32.61 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG12 FIR008 EST_SSR 17.02 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG12F FIR008 EST_SSR 12.67 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG12F FIR008 EST_SSR 11.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12M FIR008 EST_SSR 34.04 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG12F FIR008 EST_SSR 17.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG12 FIR008 EST_SSR 13.04 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12F FIR008 EST_SSR 40.83 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12F FIR008 EST_SSR 33.96 (cM) Automated name-based View Maps

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