CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs28xQs21_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG2Ma
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs28xQs21_2011 [ View Map Set Info ]
Map Name: LG2Ma
Map Start: 0.00 cM
Map Stop: 43.30 cM
Features by Type:
15 EST_SSR
15 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 15 of 15.
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2Ma
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PIE060 EST_SSR 0.00 Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb PIE060 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2F PIE060 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 PIE060 EST_SSR 14.94 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2F PIE060 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fb PIE060 EST_SSR 88.15 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2M PIE060 EST_SSR 13.45 (cM) Automated name-based View Maps
WAG003 EST_SSR 0.73 Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb WAG003 EST_SSR 0.47 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2F WAG003 EST_SSR 2.59 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2F WAG003 EST_SSR 2.94 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 WAG003 EST_SSR 16.69 (cM) Automated name-based View Maps
VIT033 EST_SSR 5.13 Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb VIT033 EST_SSR 4.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG2 VIT033 EST_SSR 90.97 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 VIT033 EST_SSR 21.24 (cM) Automated name-based View Maps
PIE211 EST_SSR 6.37 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2M PIE211 EST_SSR 60.72 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb PIE211 EST_SSR 5.82 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 PIE211 EST_SSR 22.31 (cM) Automated name-based View Maps
PIE151 EST_SSR 10.95 Quercus robur - Genetic_AltFxAltM_2011 - LG2F PIE151 EST_SSR 18.26 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2F PIE151 EST_SSR 17.85 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2F PIE151 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2M PIE151 EST_SSR 55.52 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG2F PIE151 EST_SSR 48.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M PIE151 EST_SSR 46.68 (cM) Automated name-based View Maps
POR022 EST_SSR 11.62 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 POR022 EST_SSR 27.62 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2M POR022 EST_SSR 59.44 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Ma POR022 EST_SSR 26.76 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG2M POR022 EST_SSR 80.65 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fb POR022 EST_SSR 74.71 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb POR022 EST_SSR 10.75 (cM) Automated name-based View Maps
WAG063 EST_SSR 12.47 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 WAG063 EST_SSR 28.83 (cM) Automated name-based View Maps
PIE142 EST_SSR 13.20 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 PIE142 EST_SSR 30.39 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2F PIE142 EST_SSR 17.99 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Ma PIE142 EST_SSR 32.39 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG2F PIE142 EST_SSR 1.24 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb PIE142 EST_SSR 12.92 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M PIE142 EST_SSR 43.32 (cM) Automated name-based View Maps
WAG054 EST_SSR 19.83 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 WAG054 EST_SSR 36.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb WAG054 EST_SSR 20.22 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2F WAG054 EST_SSR 23.58 (cM) Automated name-based View Maps
POR041 EST_SSR 22.16 Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb POR041 EST_SSR 21.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG2 POR041 EST_SSR 72.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG2F POR041 EST_SSR 64.90 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2F POR041 EST_SSR 67.42 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 POR041 EST_SSR 37.74 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2F POR041 EST_SSR 24.21 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2F POR041 EST_SSR 24.48 (cM) Automated name-based View Maps
FIR048 EST_SSR 24.86 Quercus robur - Genetic_AltFxAltM_2009 - LG2F FIR048 EST_SSR 41.61 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fb FIR048 EST_SSR 62.36 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2F FIR048 EST_SSR 11.08 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2F FIR048 EST_SSR 59.52 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb FIR048 EST_SSR 24.45 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2M FIR048 EST_SSR 46.29 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG2F FIR048 EST_SSR 26.41 (cM) Automated name-based View Maps
ZQP46m EST_SSR 31.58 No other positions
ZQP36 EST_SSR 33.23 No other positions
FIR112 EST_SSR 35.48 Quercus robur - Genetic_AltFxAltM_2009 - LG2M FIR112 EST_SSR 26.49 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG2Fb FIR112 EST_SSR 38.16 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG2 FIR112 EST_SSR 50.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2M FIR112 EST_SSR 77.05 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG2M FIR112 EST_SSR 58.41 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG2F FIR112 EST_SSR 34.38 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG2F FIR112 EST_SSR 3.85 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG2Mb FIR112 EST_SSR 35.49 (cM) Automated name-based View Maps
ZQP104 EST_SSR 43.30 No other positions

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