CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs28xQs21_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG3M
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs28xQs21_2011 [ View Map Set Info ]
Map Name: LG3M
Map Start: 0.00 cM
Map Stop: 66.50 cM
Features by Type:
9 EST_SSR
9 Total

Map Features

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[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 9 of 9.
Quercus petraea - Genetic_Qs28xQs21_2011 - LG3M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PIE135 EST_SSR 0.00 Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3M PIE135 EST_SSR 67.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG3M PIE135 EST_SSR 14.04 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 PIE135 EST_SSR 12.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Ma PIE135 EST_SSR 13.17 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3F PIE135 EST_SSR 0.25 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3M PIE135 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG3 PIE135 EST_SSR 64.76 (cM) Automated name-based View Maps
PIE145 EST_SSR 8.06 Quercus petraea - Genetic_Petraea_Consensus_2011 - LG3 PIE145 EST_SSR 58.24 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Ma PIE145 EST_SSR 25.99 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3M PIE145 EST_SSR 8.04 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG3F PIE145 EST_SSR 8.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fa PIE145 EST_SSR 17.03 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 PIE145 EST_SSR 20.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG3F PIE145 EST_SSR 57.06 (cM) Automated name-based View Maps
MCS1 EST_SSR 22.73 No other positions
PIE189 EST_SSR 33.07 Quercus petraea - Genetic_Qs28xQs21_2009 - LG3F PIE189 EST_SSR 34.21 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG3F PIE189 EST_SSR 28.53 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG3F PIE189 EST_SSR 4.33 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG3F PIE189 EST_SSR 23.47 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3M PIE189 EST_SSR 31.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fa PIE189 EST_SSR 32.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG3F PIE189 EST_SSR 17.89 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG3 PIE189 EST_SSR 32.15 (cM) Automated name-based View Maps
POR011 EST_SSR 38.34 Castanea sativa - Genetic_BursaxHoppa_2009 - LG8M POR011 EST_SSR 25.69 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3M POR011 EST_SSR 29.67 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3M POR011 EST_SSR 36.31 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG3Mb POR011 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 POR011 EST_SSR 38.26 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3F POR011 EST_SSR 40.77 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3F POR011 EST_SSR 39.60 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG3F POR011 EST_SSR 32.26 (cM) Automated name-based View Maps
PIE267 EST_SSR 39.80 Quercus robur - Genetic_AltFxAltM_2011 - LG3F PIE267 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3F PIE267 EST_SSR 39.42 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG3Mb PIE267 EST_SSR 22.91 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 PIE267 EST_SSR 41.73 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG3M PIE267 EST_SSR 50.16 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3M PIE267 EST_SSR 37.77 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG3F PIE267 EST_SSR 23.49 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG3F PIE267 EST_SSR 27.83 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG3 PIE267 EST_SSR 26.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Ma PIE267 EST_SSR 53.80 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3M PIE267 EST_SSR 26.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fa PIE267 EST_SSR 34.21 (cM) Automated name-based View Maps
PIE242 EST_SSR 47.72 Quercus robur - Genetic_3PxA4_2011 - LG3Ma PIE242 EST_SSR 68.27 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3M PIE242 EST_SSR 11.11 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG3 PIE242 EST_SSR 19.14 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Fa PIE242 EST_SSR 41.32 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3M PIE242 EST_SSR 45.47 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3F PIE242 EST_SSR 45.90 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2011 - LG3F PIE242 EST_SSR 59.88 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG3Mb PIE242 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 PIE242 EST_SSR 55.17 (cM) Automated name-based View Maps
PIE138 EST_SSR 62.03 Quercus robur - Genetic_3PxA4_2011 - LG3Fa PIE138 EST_SSR 52.03 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG3F PIE138 EST_SSR 1.89 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG3Fb PIE138 EST_SSR 6.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 PIE138 EST_SSR 67.53 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG3M PIE138 EST_SSR 58.16 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG3F PIE138 EST_SSR 39.48 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG3Mb PIE138 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG3 PIE138 EST_SSR 4.23 (cM) Automated name-based View Maps
PIE253 EST_SSR 66.50 Quercus robur - Genetic_3PxA4_2009 - LG3F PIE253 EST_SSR 43.31 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG3 PIE253 EST_SSR 66.08 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Petraea_Consensus_2011 - LG3 PIE253 EST_SSR 0.00 (cM) Automated name-based View Maps

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