CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs28xQs21_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6M
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs28xQs21_2011 [ View Map Set Info ]
Map Name: LG6M
Map Start: 0.00 cM
Map Stop: 68.70 cM
Features by Type:
10 EST_SSR
1 gSSR
11 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 11 of 11.
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6M
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
POR012 EST_SSR 0.00 Quercus robur - Genetic_3PxA4_2011 - LG6M POR012 EST_SSR 54.79 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M POR012 EST_SSR 72.90 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M POR012 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 POR012 EST_SSR 19.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F POR012 EST_SSR 53.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M POR012 EST_SSR 64.86 (cM) Automated name-based View Maps
GOT040 EST_SSR 5.80 Quercus robur - Genetic_Robur_Consensus_2011 - LG6 GOT040 EST_SSR 15.83 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6F GOT040 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6M GOT040 EST_SSR 62.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M GOT040 EST_SSR 57.65 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F GOT040 EST_SSR 56.46 (cM) Automated name-based View Maps
PIE260 EST_SSR 7.82 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F PIE260 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6F PIE260 EST_SSR 53.07 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6M PIE260 EST_SSR 57.98 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M PIE260 EST_SSR 65.16 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M PIE260 EST_SSR 52.32 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M PIE260 EST_SSR 8.82 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG6F PIE260 EST_SSR 40.26 (cM) Automated name-based View Maps
PIE141m EST_SSR 23.37 No other positions
PIE035 EST_SSR 24.23 Quercus robur - Genetic_3PxA4_2011 - LG6M PIE035 EST_SSR 32.26 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M PIE035 EST_SSR 40.77 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 PIE035 EST_SSR 39.99 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG6F PIE035 EST_SSR 20.48 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F PIE035 EST_SSR 25.48 (cM) Automated name-based View Maps
CQM13 gSSR 39.69 Quercus robur - Genetic_Robur_Consensus_2011 - LG6 CQM13 gSSR 42.11 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG6M CQM13 gSSR 56.52 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG6F CQM13 gSSR 51.80 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph3 - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Croissance - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6M CQM13 gSSR 39.76 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG6M CQM13 gSSR 39.60 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F CQM13 gSSR 28.93 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M CQM13 gSSR 25.42 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M CQM13 gSSR 33.56 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG6F CQM13 gSSR 24.89 (cM) Automated name-based View Maps
PQRu2 EST_SSR 40.83 Quercus petraea - Genetic_Qs28xQs21_2011 - LG6F PQRu2 EST_SSR 29.04 (cM) Automated name-based View Maps
POR037 EST_SSR 46.66 Quercus petraea - Genetic_Qs28xQs21_2009 - LG6F POR037 EST_SSR 27.35 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F POR037 EST_SSR 37.63 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6F POR037 EST_SSR 29.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M POR037 EST_SSR 18.64 (cM) Automated name-based View Maps
ZQP16 EST_SSR 54.35 No other positions
POR027 EST_SSR 57.29 Quercus robur - Genetic_3PxA4_2009 - LG6F POR027 EST_SSR 7.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6M POR027 EST_SSR 8.16 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 POR027 EST_SSR 63.54 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6M POR027 EST_SSR 11.12 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG6F POR027 EST_SSR 39.54 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG6F POR027 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG6M POR027 EST_SSR 10.64 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M POR027 EST_SSR 52.84 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M POR027 EST_SSR 21.13 (cM) Automated name-based View Maps
PIE071 EST_SSR 68.70 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6M PIE071 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG6 PIE071 EST_SSR 74.04 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG6F PIE071 EST_SSR 0.66 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG6M PIE071 EST_SSR 73.77 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG6F PIE071 EST_SSR 59.11 (cM) Automated name-based View Maps

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