CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_Robur_Consensus_2011  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG12
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Magnification
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_Robur_Consensus_2011 [ View Map Set Info ]
Map Name: LG12
Map Start: 0.00 cM
Map Stop: 64.17 cM
Features by Type:
14 EST_SSR
3 gSSR
17 Total

Map Features

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Items 1 to 17 of 17.
Quercus robur - Genetic_Robur_Consensus_2011 - LG12
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PIE039 EST_SSR 0.00 Quercus robur - Genetic_3PxA4_2009 - LG12M PIE039 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12F PIE039 EST_SSR 47.73 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12M PIE039 EST_SSR 56.67 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12M PIE039 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12M PIE039 EST_SSR 56.61 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F PIE039 EST_SSR 68.00 (cM) Automated name-based View Maps
PIE089 EST_SSR 1.79 Quercus robur - Genetic_3PxA4_2011 - LG12M PIE089 EST_SSR 1.77 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG12M PIE089 EST_SSR 47.58 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG12M PIE089 EST_SSR 46.17 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F PIE089 EST_SSR 71.26 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12M PIE089 EST_SSR 53.05 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12M PIE089 EST_SSR 52.32 (cM) Automated name-based View Maps
GOT009 EST_SSR 3.66 Quercus robur - Genetic_3PxA4_2009 - LG12M GOT009 EST_SSR 4.19 (cM) Automated name-based View Maps
Quercus robur - Genetic_Robur_Consensus_2011 - LG1 GOT009 EST_SSR 53.08 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG12M GOT009 EST_SSR 40.13 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12M GOT009 EST_SSR 3.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG1M GOT009 EST_SSR 11.47 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG12F GOT009 EST_SSR 0.00 (cM) Automated name-based View Maps
GOT014 EST_SSR 7.70 Quercus petraea - Genetic_Qs28xQs21_2011 - LG12M GOT014 EST_SSR 36.19 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG12M GOT014 EST_SSR 36.47 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12M GOT014 EST_SSR 53.41 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG12M GOT014 EST_SSR 11.55 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12M GOT014 EST_SSR 51.52 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12M GOT014 EST_SSR 8.50 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12F GOT014 EST_SSR 45.93 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG12F GOT014 EST_SSR 17.74 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F GOT014 EST_SSR 67.01 (cM) Automated name-based View Maps
VIT010 EST_SSR 9.45 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12M VIT010 EST_SSR 34.48 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG12F VIT010 EST_SSR 9.59 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F VIT010 EST_SSR 59.78 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12M VIT010 EST_SSR 35.99 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG12F VIT010 EST_SSR 20.40 (cM) Automated name-based View Maps
FIR008 EST_SSR 13.04 Quercus petraea - Genetic_Qs28xQs21_2011 - LG12F FIR008 EST_SSR 11.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12M FIR008 EST_SSR 34.04 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG12F FIR008 EST_SSR 17.86 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F FIR008 EST_SSR 55.89 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12F FIR008 EST_SSR 33.96 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12M FIR008 EST_SSR 32.61 (cM) Automated name-based View Maps
PIE203 EST_SSR 17.84 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F PIE203 EST_SSR 49.52 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12F PIE203 EST_SSR 28.61 (cM) Automated name-based View Maps
PIE126 EST_SSR 19.15 Quercus petraea - Genetic_Qs28xQs21_2009 - LG12F PIE126 EST_SSR 16.27 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG12F PIE126 EST_SSR 13.45 (cM) Automated name-based View Maps
GOT032 EST_SSR 24.87 Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F GOT032 EST_SSR 36.58 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12M GOT032 EST_SSR 28.27 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG12F GOT032 EST_SSR 9.14 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG12F GOT032 EST_SSR 20.16 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12F GOT032 EST_SSR 22.44 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12M GOT032 EST_SSR 25.53 (cM) Automated name-based View Maps
ZQR8 gSSR 27.49 Quercus robur - Genetic_3PxA4_2007 - LG12M ZQR8 gSSR 65.13 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12M ZQR8 gSSR 24.42 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG12M ZQR8 gSSR 27.05 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG12M ZQR8 gSSR 34.74 (cM) Automated name-based View Maps
PIE196 EST_SSR 29.04 Quercus petraea - Genetic_Qs28xQs21_2009 - LG12M PIE196 EST_SSR 23.29 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12F PIE196 EST_SSR 20.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG12M PIE196 EST_SSR 23.19 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F PIE196 EST_SSR 41.08 (cM) Automated name-based View Maps
PIE236 EST_SSR 36.27 Quercus petraea - Genetic_Qs28xQs21_2009 - LG12F PIE236 EST_SSR 3.67 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12M PIE236 EST_SSR 32.81 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12F PIE236 EST_SSR 12.12 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F PIE236 EST_SSR 30.73 (cM) Automated name-based View Maps
ZQR112 gSSR 38.08 Quercus robur - QTL_3PxA4_2009_No_analysis_EST - LG12F ZQR112 gSSR 45.07 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph1 - LG12F ZQR112 gSSR 32.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG12F ZQR112 gSSR 18.79 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG12F ZQR112 gSSR 25.70 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Debour - LG12F ZQR112 gSSR 33.60 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Leaf_morph2 - LG12F ZQR112 gSSR 32.40 (cM) Automated name-based View Maps
Quercus robur - MultiQTL_3PxA4_2009_Grow_seas - LG12F ZQR112 gSSR 33.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2011 - LG12M ZQR112 gSSR 18.82 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG12F ZQR112 gSSR 25.70 (cM) Automated name-based View Maps
Quercus robur - QTL_3PxA4_2008_Hypoxie - LG12F ZQR112 gSSR 33.60 (cM) Automated name-based View Maps
GOT054 EST_SSR 46.10 No other positions
POR020 EST_SSR 50.48 Quercus robur - Genetic_3PxA4_2009 - LG12M POR020 EST_SSR 57.73 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12M POR020 EST_SSR 6.78 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG12M POR020 EST_SSR 6.10 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12M POR020 EST_SSR 7.21 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG12F POR020 EST_SSR 14.87 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG12F POR020 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG12M POR020 EST_SSR 6.12 (cM) Automated name-based View Maps
ZQR30 gSSR 61.10 Quercus robur - Genetic_3PxA4_2007 - LG12M ZQR30 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2011 - LG12M ZQR30 gSSR 55.94 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2009 - LG12M ZQR30 gSSR 45.60 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - QTL_EF03xSL03_2009_Leaf_morph - LG12M ZQR30 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG12M ZQR30 gSSR 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus robur subsp. slavonica - Genetic_EF03xSL03_2009 - LG12F ZQR30 gSSR 0.00 (cM) Automated name-based View Maps
PIE042 EST_SSR 64.17 Quercus petraea - Genetic_Qs28xQs21_2009 - LG12M PIE042 EST_SSR 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG12M PIE042 EST_SSR 0.00 (cM) Automated name-based View Maps

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