CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_Robur_Composite_2013  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST_SSR
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_Robur_Composite_2013 [ View Map Set Info ]
Map Name: LG1
Map Start: 0.00 cM
Map Stop: 66.43 cM
Features by Type:
410 SNP
11 EST_SSR
421 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 421.       of 17 | Next
Quercus robur - Genetic_Robur_Composite_2013 - LG1
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
v_12308_67 SNP 0.67 No other positions
s_1B123O_519 SNP 12.33 No other positions
s_2GE464_807 SNP 25.10 No other positions
s_1A7OYR_467 SNP 25.10 No other positions
s_1A6LN4_1588 SNP 44.89 No other positions
s_1A1PB2_701 SNP 44.66 No other positions
s_1CSRMZ_154 SNP 44.61 No other positions
v_4034_270 SNP 53.09 No other positions
VIT026 EST_SSR 66.43 No other positions
GOT025 EST_SSR 64.43 No other positions
FIR028 EST_SSR 50.61 No other positions
POR040 EST_SSR 39.54 No other positions
GOT017 EST_SSR 35.08 No other positions
GOT008 EST_SSR 32.46 No other positions
WAG040 EST_SSR 24.66 No other positions
FIR039 EST_SSR 20.47 No other positions
PIE122 EST_SSR 18.44 No other positions
WAG011 EST_SSR 5.89 No other positions
POR015 EST_SSR 0.00 No other positions
ZQR74 SNP 66.43 No other positions
s_1B67KI_230 SNP 64.70 No other positions
s_1A0B8J_158 SNP 64.43 No other positions
s_1AXHDU_975 SNP 64.43 No other positions
s_1AXHDU_1062 SNP 64.43 No other positions
s_1DFMWX_736 SNP 64.43 No other positions

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