CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_Robur_Composite_2013  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG10
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST_SSR
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_Robur_Composite_2013 [ View Map Set Info ]
Map Name: LG10
Map Start: 0.00 cM
Map Stop: 70.07 cM
Features by Type:
375 SNP
6 EST_SSR
381 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 381.       of 16 | Next
Quercus robur - Genetic_Robur_Composite_2013 - LG10
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1AKX9X_1015 SNP 6.66 No other positions
s_1A6P85_230 SNP 6.55 No other positions
s_1A1M3H_1148 SNP 6.55 No other positions
s_1B1V8C_1374 SNP 20.23 No other positions
s_1A5XL6_353 SNP 35.50 No other positions
PIE243 EST_SSR 47.67 No other positions
PIE224 EST_SSR 42.89 No other positions
WAG020 EST_SSR 35.49 No other positions
PIE148 EST_SSR 15.73 No other positions
PIE233 EST_SSR 12.72 No other positions
FIR023 EST_SSR 4.37 No other positions
s_2FT23N_422 SNP 70.07 No other positions
s_2FT23N_189 SNP 70.07 No other positions
s_AE01EPFEP_360 SNP 65.69 No other positions
s_1BABT1_422 SNP 65.61 No other positions
s_1AIZHY_768 SNP 65.61 No other positions
s_1A5EKO_956 SNP 65.61 No other positions
v_9943_223 SNP 65.34 No other positions
s_AE01EPFEP_586 SNP 65.34 No other positions
s_2IB9FQ_842 SNP 65.34 No other positions
s_1APAML_1419 SNP 65.34 No other positions
v_9831_1129 SNP 65.34 No other positions
s_1AOU7J_489 SNP 65.34 No other positions
s_1AHV3Z_964 SNP 65.34 No other positions
s_1A0NCP_631 SNP 65.33 No other positions

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