CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_Robur_Composite_2013  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG12
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST_SSR
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_Robur_Composite_2013 [ View Map Set Info ]
Map Name: LG12
Map Start: 0.00 cM
Map Stop: 66.82 cM
Features by Type:
446 SNP
11 EST_SSR
457 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 457.       of 19 | Next
Quercus robur - Genetic_Robur_Composite_2013 - LG12
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
v_7050_211 SNP 28.45 No other positions
s_1B0DDG_756 SNP 28.45 No other positions
s_1AJOZ6_1264 SNP 27.64 No other positions
v_12709_177 SNP 38.39 No other positions
s_1DXRZZ_735 SNP 45.80 No other positions
s_1A2KUF_327 SNP 54.51 No other positions
FIR059 EST_SSR 57.72 No other positions
POR020 EST_SSR 49.98 No other positions
PIE236 EST_SSR 39.90 No other positions
GOT032 EST_SSR 30.10 No other positions
PIE196 EST_SSR 27.10 No other positions
GOT014 EST_SSR 17.50 No other positions
FIR008 EST_SSR 16.09 No other positions
PIE215 EST_SSR 10.57 No other positions
PIE042 EST_SSR 58.90 No other positions
PIE089 EST_SSR 7.25 No other positions
PIE039 EST_SSR 0.57 No other positions
s_1A06CO_141 SNP 66.82 No other positions
s_2II307_190 SNP 66.82 No other positions
s_2II307_636 SNP 66.82 No other positions
s_1APFMC_492 SNP 66.53 No other positions
s_1CIKQ5_387 SNP 64.93 No other positions
v_13865_370 SNP 64.93 No other positions
s_1BKXMG_471 SNP 63.87 No other positions
s_1AD_738 SNP 63.87 No other positions

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