CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_Robur_Composite_2013  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG3
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST_SSR
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_Robur_Composite_2013 [ View Map Set Info ]
Map Name: LG3
Map Start: 0.00 cM
Map Stop: 79.23 cM
Features by Type:
392 SNP
8 EST_SSR
400 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 400.       of 16 | Next
Quercus robur - Genetic_Robur_Composite_2013 - LG3
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1BE472_429 SNP 7.32 No other positions
s_1DABF1_848 SNP 7.32 No other positions
s_1DABF1_1016 SNP 7.32 No other positions
s_1CWD6S_294 SNP 18.64 No other positions
s_1A78NE_1570 SNP 35.42 No other positions
s_1ETGZR_177 SNP 51.79 No other positions
v_3234_846 SNP 51.56 No other positions
s_1DBVR3_572 SNP 62.58 No other positions
POR032 EST_SSR 56.02 No other positions
PIE242 EST_SSR 51.79 No other positions
PIE267 EST_SSR 41.10 No other positions
FIR075 EST_SSR 32.30 No other positions
PIE145 EST_SSR 15.33 No other positions
PIE065 EST_SSR 7.32 No other positions
FIR004 EST_SSR 7.13 No other positions
PIE135 EST_SSR 0.00 No other positions
v_2106_57 SNP 14.10 No other positions
v_12115_159 SNP 79.23 No other positions
s_1C8A90_1087 SNP 75.98 No other positions
s_1A7FVH_746 SNP 75.40 No other positions
s_1BA733_1141 SNP 75.40 No other positions
s_1A7FVH_488 SNP 74.82 No other positions
s_2H5OA4_462 SNP 72.48 No other positions
s_1C9UJS_822 SNP 70.76 No other positions
s_1BIS0M_475 SNP 70.76 No other positions

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