CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_Robur_Composite_2013  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG4
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST_SSR
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_Robur_Composite_2013 [ View Map Set Info ]
Map Name: LG4
Map Start: 0.00 cM
Map Stop: 89.42 cM
Features by Type:
283 SNP
8 EST_SSR
291 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 291.       of 12 | Next
Quercus robur - Genetic_Robur_Composite_2013 - LG4
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1BNUC_1145 SNP 15.39 No other positions
s_1B59MJ_895 SNP 15.34 No other positions
s_1BN1FM_1288 SNP 45.24 No other positions
s_1A4V2R_697 SNP 44.84 No other positions
s_1A5RSF_270 SNP 44.83 No other positions
s_1C80YV_395 SNP 66.07 No other positions
PIE176 EST_SSR 55.01 No other positions
PIE216 EST_SSR 40.57 No other positions
WAG016 EST_SSR 39.53 No other positions
PIE228 EST_SSR 24.34 No other positions
POR029 EST_SSR 12.11 No other positions
VIT015 EST_SSR 7.86 No other positions
GOT047 EST_SSR 7.37 No other positions
PIE002 EST_SSR 0.00 No other positions
s_1BBT97_1255 SNP 89.42 No other positions
s_1ATI_930 SNP 75.42 No other positions
s_1A5CQZ_1523 SNP 75.25 No other positions
s_1AZLA4_2027 SNP 74.93 No other positions
s_1AKV9K_1217 SNP 74.93 No other positions
s_1ANRCD_1358 SNP 74.86 No other positions
s_1ATI_993 SNP 74.64 No other positions
s_1BDTC1_943 SNP 73.90 No other positions
s_1CCGOP_543 SNP 73.57 No other positions
s_1CPNCI_297 SNP 73.49 No other positions
s_1EDWAV_881 SNP 73.20 No other positions

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