CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_Robur_Composite_2013  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST_SSR
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_Robur_Composite_2013 [ View Map Set Info ]
Map Name: LG6
Map Start: 0.00 cM
Map Stop: 74.87 cM
Features by Type:
528 SNP
9 EST_SSR
537 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 537.       of 22 | Next
Quercus robur - Genetic_Robur_Composite_2013 - LG6
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
v_8111_1083 SNP 18.64 No other positions
s_1AFSR5_630 SNP 18.36 No other positions
v_11781_57 SNP 38.50 No other positions
s_1APDOD_732 SNP 38.50 No other positions
ZQP64 SNP 46.67 No other positions
s_1ARFNI_1006 SNP 58.11 No other positions
s_1AMQ8F_1915 SNP 66.50 No other positions
s_1CH4KM_487 SNP 66.40 No other positions
WAG059 EST_SSR 59.35 No other positions
PIE071 EST_SSR 58.82 No other positions
POR027 EST_SSR 51.24 No other positions
PIE125 EST_SSR 32.20 No other positions
PIE035 EST_SSR 31.31 No other positions
POR021 EST_SSR 24.67 No other positions
PIE260 EST_SSR 13.25 No other positions
GOT040 EST_SSR 7.62 No other positions
POR012 EST_SSR 6.58 No other positions
v_14061_224 SNP 74.87 No other positions
s_2G6VU9_1078 SNP 74.87 No other positions
v_7315_89 SNP 74.01 No other positions
v_7609_84 SNP 74.01 No other positions
s_1A5ZRU_893 SNP 73.15 No other positions
v_2726_182 SNP 72.86 No other positions
s_1A7L00_1531 SNP 72.86 No other positions
v_7315_108 SNP 72.86 No other positions

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