CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_Robur_Composite_2013  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG7
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST_SSR
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_Robur_Composite_2013 [ View Map Set Info ]
Map Name: LG7
Map Start: 0.00 cM
Map Stop: 65.26 cM
Features by Type:
411 SNP
8 EST_SSR
419 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 419.       of 17 | Next
Quercus robur - Genetic_Robur_Composite_2013 - LG7
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1BV2N3_696 SNP 10.73 No other positions
s_1A0H35_1051 SNP 20.31 No other positions
s_1ASQI0_1294 SNP 45.17 No other positions
s_1A0MX_607 SNP 45.17 No other positions
v_4126_99 SNP 45.11 No other positions
s_1A97I_750 SNP 55.01 No other positions
PIE137 EST_SSR 49.97 No other positions
FIR069 EST_SSR 42.04 No other positions
FIR043 EST_SSR 38.99 No other positions
GOT004 EST_SSR 38.96 No other positions
FIR030 EST_SSR 35.16 No other positions
POR035 EST_SSR 14.16 No other positions
PIE219 EST_SSR 57.61 No other positions
POR025 EST_SSR 0.00 No other positions
s_1A69R9_277 SNP 65.26 No other positions
s_1A0V83_304 SNP 64.63 No other positions
s_1A1W90_1264 SNP 64.63 No other positions
s_1A0V83_194 SNP 64.38 No other positions
s_1AS3PF_1616 SNP 63.50 No other positions
s_1AEPN8_195 SNP 63.50 No other positions
v_12101_526 SNP 63.24 No other positions
v_15652_709 SNP 62.93 No other positions
s_1AEOKC_1365 SNP 62.93 No other positions
s_1DUHWL_492 SNP 62.93 No other positions
s_1A2FYJ_520 SNP 62.93 No other positions

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