CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_Robur_Composite_2013  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG9
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST_SSR
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_Robur_Composite_2013 [ View Map Set Info ]
Map Name: LG9
Map Start: 0.00 cM
Map Stop: 76.24 cM
Features by Type:
392 SNP
8 EST_SSR
400 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 400.       of 16 | Next
Quercus robur - Genetic_Robur_Composite_2013 - LG9
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1C7SY2_341 SNP 8.66 No other positions
ZQR31 SNP 12.57 No other positions
s_1BRK92_1900 SNP 34.12 No other positions
s_1B8U4I_429 SNP 48.87 No other positions
s_1BYJC1_920 SNP 65.10 No other positions
PIE264 EST_SSR 30.86 No other positions
FIR005 EST_SSR 12.57 No other positions
GOT067 EST_SSR 66.30 No other positions
WAG064 EST_SSR 56.83 No other positions
PIE259 EST_SSR 52.71 No other positions
PIE059 EST_SSR 37.45 No other positions
FIR026 EST_SSR 0.00 No other positions
WAG060 EST_SSR 0.00 No other positions
s_1BYJC1_1246 SNP 76.24 No other positions
s_1AXMN1_1126 SNP 34.12 No other positions
s_1AQUX9_951 SNP 33.92 No other positions
s_1BDO6G_250 SNP 32.89 No other positions
s_1A2HVD_401 SNP 32.89 No other positions
s_1AGBMU_664 SNP 32.89 No other positions
s_1AH0RZ_461 SNP 32.33 No other positions
s_1A2HVD_145 SNP 32.33 No other positions
s_1A8WGI_751 SNP 31.16 No other positions
s_1A3Z44_2196 SNP 30.86 No other positions
s_AUEBN_524 SNP 30.31 No other positions
s_1A52IC_170 SNP 30.31 No other positions

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