CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_x3P_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG2
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_x3P_2015 [ View Map Set Info ]
Map Name: LG2
Map Start: 0.00 cM
Map Stop: 87.37 cM
Features by Type:
199 SNP
199 Total

Map Features

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Items 1 to 25 of 199.       of 8 | Next
Quercus robur - Genetic_x3P_2015 - LG2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1AFV4O_1189 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AFV4O_1189 SNP 0.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG2 s_1AFV4O_1189 SNP 0.00 (cM) Automated name-based View Maps
s_1A7A5_1484 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG2 s_1A7A5_1484 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG2 s_1A7A5_1484 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A7A5_1484 SNP 0.60 (cM) Automated name-based View Maps
s_1ATCS2_834 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1ATCS2_834 SNP 0.60 (cM) Automated name-based View Maps
s_BM7N7_371 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_BM7N7_371 SNP 0.60 (cM) Automated name-based View Maps
s_1AMCLE_683 SNP 0.00 Quercus petraea - Genetic_Qs29_2015 - LG2 s_1AMCLE_683 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AMCLE_683 SNP 0.70 (cM) Automated name-based View Maps
s_1AJKFL_1083 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AJKFL_1083 SNP 0.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1AJKFL_1083 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 s_1AJKFL_1083 SNP 0.00 (cM) Automated name-based View Maps
s_1A1P6I_674 SNP 0.00 Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1A1P6I_674 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A1P6I_674 SNP 0.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG2 s_1A1P6I_674 SNP 0.00 (cM) Automated name-based View Maps
s_2FHH8O_315 SNP 0.00 Quercus petraea - Genetic_Qs28f_2015 - LG2 s_2FHH8O_315 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_2FHH8O_315 SNP 0.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_2FHH8O_315 SNP 1.69 (cM) Automated name-based View Maps
s_1B624Y_536 SNP 0.31 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1B624Y_536 SNP 1.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 s_1B624Y_536 SNP 0.00 (cM) Automated name-based View Maps
s_1A4VPK_728 SNP 0.62 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A4VPK_728 SNP 1.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG2 s_1A4VPK_728 SNP 0.29 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1A4VPK_728 SNP 2.25 (cM) Automated name-based View Maps
s_1AOSRF_888 SNP 0.62 Quercus petraea - Genetic_Qs21_2015 - LG2 s_1AOSRF_888 SNP 1.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AOSRF_888 SNP 1.30 (cM) Automated name-based View Maps
s_1BK7TK_511 SNP 1.85 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BK7TK_511 SNP 2.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG2 s_1BK7TK_511 SNP 0.56 (cM) Automated name-based View Maps
s_1CLCM4_268 SNP 2.16 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1CLCM4_268 SNP 2.80 (cM) Automated name-based View Maps
s_1A74WY_1094 SNP 2.16 Quercus petraea - Genetic_Qs29_2015 - LG2 s_1A74WY_1094 SNP 0.88 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1A74WY_1094 SNP 5.06 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A74WY_1094 SNP 2.80 (cM) Automated name-based View Maps
s_1CMXCM_969 SNP 3.40 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1CMXCM_969 SNP 3.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG2 s_1CMXCM_969 SNP 3.71 (cM) Automated name-based View Maps
s_1A5Y13_1066 SNP 3.70 Quercus petraea - Genetic_Qs21_2015 - LG2 s_1A5Y13_1066 SNP 3.71 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A5Y13_1066 SNP 3.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG2 s_1A5Y13_1066 SNP 1.69 (cM) Automated name-based View Maps
s_2IXCCB_597 SNP 4.01 Quercus robur - Genetic_x11P1_2015 - LG2 s_2IXCCB_597 SNP 2.25 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG2 s_2IXCCB_597 SNP 7.90 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_2IXCCB_597 SNP 4.10 (cM) Automated name-based View Maps
s_1AI6BE_806 SNP 4.01 Quercus petraea - Genetic_Qs28f_2015 - LG2 s_1AI6BE_806 SNP 3.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AI6BE_806 SNP 4.60 (cM) Automated name-based View Maps
s_1AFN4Y_1008 SNP 4.01 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AFN4Y_1008 SNP 4.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 s_1AFN4Y_1008 SNP 1.75 (cM) Automated name-based View Maps
s_1AW0V2_1404 SNP 4.01 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AW0V2_1404 SNP 4.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG2 s_1AW0V2_1404 SNP 3.43 (cM) Automated name-based View Maps
s_2I25L3_821 SNP 4.01 Quercus robur - Genetic_x11P2_2015 - LG2 s_2I25L3_821 SNP 7.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG2 s_2I25L3_821 SNP 2.81 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_2I25L3_821 SNP 4.60 (cM) Automated name-based View Maps
s_1A3LC9_1397 SNP 4.32 Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1A3LC9_1397 SNP 7.30 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A3LC9_1397 SNP 5.00 (cM) Automated name-based View Maps
s_1BB3UQ_1194 SNP 4.32 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BB3UQ_1194 SNP 5.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1BB3UQ_1194 SNP 7.30 (cM) Automated name-based View Maps
v_999_1108 SNP 4.94 Quercus petraea - Genetic_Qs29_2015 - LG2 v_999_1108 SNP 2.63 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG2 v_999_1108 SNP 6.57 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 v_999_1108 SNP 5.50 (cM) Automated name-based View Maps
s_1BRVIG_130 SNP 5.25 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BRVIG_130 SNP 5.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1BRVIG_130 SNP 7.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG2 s_1BRVIG_130 SNP 5.06 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 s_1BRVIG_130 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG2 s_1BRVIG_130 SNP 9.65 (cM) Automated name-based View Maps

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