CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_x3P_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG3
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_x3P_2015 [ View Map Set Info ]
Map Name: LG3
Map Start: 0.00 cM
Map Stop: 51.89 cM
Features by Type:
80 SNP
80 Total

Map Features

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Items 1 to 25 of 80.       of 4 | Next
Quercus robur - Genetic_x3P_2015 - LG3
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1BA733_1141 SNP 0.00 Quercus petraea - Genetic_Qs21_2015 - LG3 s_1BA733_1141 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1BA733_1141 SNP 3.10 (cM) Automated name-based View Maps
v_7974_341 SNP 0.00 Quercus robur - Genetic_A4_2015 - LG3 v_7974_341 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG3 v_7974_341 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 v_7974_341 SNP 3.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG3 v_7974_341 SNP 0.00 (cM) Automated name-based View Maps
s_2H5OA4_379 SNP 0.00 Quercus robur - Genetic_x11P2_2015 - LG3 s_2H5OA4_379 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_2H5OA4_379 SNP 3.40 (cM) Automated name-based View Maps
s_1B81AX_458 SNP 1.54 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1B81AX_458 SNP 4.70 (cM) Automated name-based View Maps
s_1A4401_124 SNP 2.78 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1A4401_124 SNP 5.90 (cM) Automated name-based View Maps
s_1A4L7L_341 SNP 4.63 Quercus petraea - Genetic_Qs28f_2015 - LG3 s_1A4L7L_341 SNP 3.14 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG3 s_1A4L7L_341 SNP 3.94 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG3 s_1A4L7L_341 SNP 3.70 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1A4L7L_341 SNP 7.30 (cM) Automated name-based View Maps
s_1A4AJB_1098 SNP 4.94 Quercus petraea - Genetic_Qs28f_2015 - LG3 s_1A4AJB_1098 SNP 3.71 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG3 s_1A4AJB_1098 SNP 4.50 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1A4AJB_1098 SNP 7.90 (cM) Automated name-based View Maps
s_1CVCLK_1032 SNP 4.94 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1CVCLK_1032 SNP 8.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG3 s_1CVCLK_1032 SNP 3.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG3 s_1CVCLK_1032 SNP 4.39 (cM) Automated name-based View Maps
s_1CXNYP_1722 SNP 7.72 Quercus robur - Genetic_x11P2_2015 - LG3 s_1CXNYP_1722 SNP 5.27 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1CXNYP_1722 SNP 10.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG3 s_1CXNYP_1722 SNP 6.00 (cM) Automated name-based View Maps
s_1AF8ER_102 SNP 7.72 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1AF8ER_102 SNP 11.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG3 s_1AF8ER_102 SNP 7.31 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG3 s_1AF8ER_102 SNP 6.00 (cM) Automated name-based View Maps
v_10992_170 SNP 8.03 Quercus robur - Genetic_x11P1_2015 - LG3 v_10992_170 SNP 4.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG3 v_10992_170 SNP 10.58 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 v_10992_170 SNP 11.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG3 v_10992_170 SNP 11.42 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG3 v_10992_170 SNP 7.90 (cM) Automated name-based View Maps
s_1AGC77_819 SNP 8.65 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1AGC77_819 SNP 12.10 (cM) Automated name-based View Maps
v_11385_200 SNP 8.65 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 v_11385_200 SNP 12.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG3 v_11385_200 SNP 8.78 (cM) Automated name-based View Maps
s_1A1SFE_244 SNP 8.65 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1A1SFE_244 SNP 12.10 (cM) Automated name-based View Maps
s_1A1E8S_611 SNP 8.65 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1A1E8S_611 SNP 12.10 (cM) Automated name-based View Maps
s_1A8GJ7_362 SNP 10.19 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1A8GJ7_362 SNP 13.70 (cM) Automated name-based View Maps
s_1A1V8F_657 SNP 11.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1A1V8F_657 SNP 14.90 (cM) Automated name-based View Maps
s_1A9N17_577 SNP 13.59 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1A9N17_577 SNP 16.90 (cM) Automated name-based View Maps
s_1AG3FW_571 SNP 13.59 Quercus petraea - Genetic_Qs28m_2015 - LG3 s_1AG3FW_571 SNP 14.06 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1AG3FW_571 SNP 17.10 (cM) Automated name-based View Maps
v_15523_291 SNP 13.59 Quercus petraea - Genetic_Qs21_2015 - LG3 v_15523_291 SNP 16.30 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 v_15523_291 SNP 17.10 (cM) Automated name-based View Maps
s_1A3TS1_1090 SNP 15.44 Quercus robur - Genetic_x11P2_2015 - LG3 s_1A3TS1_1090 SNP 11.41 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG3 s_1A3TS1_1090 SNP 7.87 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG3 s_1A3TS1_1090 SNP 17.16 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1A3TS1_1090 SNP 18.10 (cM) Automated name-based View Maps
s_1APEMZ_262 SNP 16.06 Quercus robur - Genetic_x11P2_2015 - LG3 s_1APEMZ_262 SNP 12.29 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1APEMZ_262 SNP 19.00 (cM) Automated name-based View Maps
s_1COSV1_1036 SNP 16.06 Quercus robur - Genetic_x11P2_2015 - LG3 s_1COSV1_1036 SNP 13.16 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG3 s_1COSV1_1036 SNP 16.31 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1COSV1_1036 SNP 19.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG3 s_1COSV1_1036 SNP 8.99 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG3 s_1COSV1_1036 SNP 14.86 (cM) Automated name-based View Maps
s_2GIVPY_569 SNP 16.06 Quercus petraea - Genetic_Qs29_2015 - LG3 s_2GIVPY_569 SNP 23.71 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_2GIVPY_569 SNP 20.40 (cM) Automated name-based View Maps
s_1BTLS7_2051 SNP 17.60 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1BTLS7_2051 SNP 21.80 (cM) Automated name-based View Maps

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