CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_x3P_2015  (Reference Set)
Min. Correspondence
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Maps LG5
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Magnification
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_x3P_2015 [ View Map Set Info ]
Map Name: LG5
Map Start: 0.00 cM
Map Stop: 60.22 cM
Features by Type:
84 SNP
84 Total

Map Features

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Items 1 to 25 of 84.       of 4 | Next
Quercus robur - Genetic_x3P_2015 - LG5
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1A05K9_232 SNP 0.00 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1A05K9_232 SNP 1.12 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A05K9_232 SNP 0.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 s_1A05K9_232 SNP 0.00 (cM) Automated name-based View Maps
v_12032_111 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_12032_111 SNP 0.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG5 v_12032_111 SNP 0.29 (cM) Automated name-based View Maps
s_2HOO9O_335 SNP 0.62 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_2HOO9O_335 SNP 1.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_2HOO9O_335 SNP 1.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_2HOO9O_335 SNP 1.69 (cM) Automated name-based View Maps
s_2F4GE9_1304 SNP 1.54 Quercus robur - Genetic_x11P2_2015 - LG5 s_2F4GE9_1304 SNP 1.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_2F4GE9_1304 SNP 2.81 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_2F4GE9_1304 SNP 2.00 (cM) Automated name-based View Maps
s_1AJ7K2_523 SNP 2.47 Quercus robur - Genetic_x11P1_2015 - LG5 s_1AJ7K2_523 SNP 3.37 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AJ7K2_523 SNP 2.90 (cM) Automated name-based View Maps
s_1AG5OQ_1088 SNP 3.40 Quercus robur - Genetic_x11P2_2015 - LG5 s_1AG5OQ_1088 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AG5OQ_1088 SNP 2.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1AG5OQ_1088 SNP 3.37 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 s_1AG5OQ_1088 SNP 4.57 (cM) Automated name-based View Maps
s_1BAKFR_1171 SNP 5.87 Quercus robur - Genetic_A4_2015 - LG5 s_1BAKFR_1171 SNP 7.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1BAKFR_1171 SNP 9.66 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1BAKFR_1171 SNP 10.14 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1BAKFR_1171 SNP 4.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG5 s_1BAKFR_1171 SNP 5.72 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1BAKFR_1171 SNP 6.10 (cM) Automated name-based View Maps
s_1B9KYX_730 SNP 6.79 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1B9KYX_730 SNP 7.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 s_1B9KYX_730 SNP 11.43 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 s_1B9KYX_730 SNP 7.72 (cM) Automated name-based View Maps
s_1ANXAC_208 SNP 8.95 Quercus petraea - Genetic_Qs28f_2015 - LG5 s_1ANXAC_208 SNP 10.58 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1ANXAC_208 SNP 10.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1ANXAC_208 SNP 15.77 (cM) Automated name-based View Maps
s_1A6ZXS_174 SNP 8.95 Quercus petraea - Genetic_Qs29_2015 - LG5 s_1A6ZXS_174 SNP 14.06 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A6ZXS_174 SNP 10.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 s_1A6ZXS_174 SNP 10.29 (cM) Automated name-based View Maps
s_1A4YOR_776 SNP 8.95 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A4YOR_776 SNP 10.10 (cM) Automated name-based View Maps
s_2JX616_737 SNP 9.26 Quercus petraea - Genetic_Qs21_2015 - LG5 s_2JX616_737 SNP 12.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_2JX616_737 SNP 11.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_2JX616_737 SNP 11.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_2JX616_737 SNP 13.18 (cM) Automated name-based View Maps
s_1A5CCE_794 SNP 9.26 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A5CCE_794 SNP 11.50 (cM) Automated name-based View Maps
s_1DPLMF_1018 SNP 9.26 Quercus robur - Genetic_x11P1_2015 - LG5 s_1DPLMF_1018 SNP 11.80 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1DPLMF_1018 SNP 11.50 (cM) Automated name-based View Maps
s_1C5XFJ_252 SNP 9.26 Quercus petraea - Genetic_Qs21_2015 - LG5 s_1C5XFJ_252 SNP 12.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1C5XFJ_252 SNP 11.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1C5XFJ_252 SNP 14.93 (cM) Automated name-based View Maps
s_2FNVOR_481 SNP 9.26 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_2FNVOR_481 SNP 11.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_2FNVOR_481 SNP 12.37 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 s_2FNVOR_481 SNP 12.00 (cM) Automated name-based View Maps
s_1BR91V_722 SNP 10.50 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1BR91V_722 SNP 12.70 (cM) Automated name-based View Maps
s_APVE7_1182 SNP 11.42 Quercus petraea - Genetic_Qs28f_2015 - LG5 s_APVE7_1182 SNP 13.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_APVE7_1182 SNP 16.68 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_APVE7_1182 SNP 13.70 (cM) Automated name-based View Maps
s_2GBON0_421 SNP 12.66 Quercus petraea - Genetic_Qs21_2015 - LG5 s_2GBON0_421 SNP 16.58 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_2GBON0_421 SNP 14.90 (cM) Automated name-based View Maps
s_1AMJES_1308 SNP 14.20 Quercus robur - Genetic_x11P2_2015 - LG5 s_1AMJES_1308 SNP 20.19 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AMJES_1308 SNP 16.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1AMJES_1308 SNP 15.17 (cM) Automated name-based View Maps
s_1CCWCC_289 SNP 16.67 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1CCWCC_289 SNP 18.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1CCWCC_289 SNP 25.32 (cM) Automated name-based View Maps
s_2G6FHW_2287 SNP 18.22 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_2G6FHW_2287 SNP 20.30 (cM) Automated name-based View Maps
s_1C4QF6_391 SNP 18.53 Quercus robur - Genetic_x11P1_2015 - LG5 s_1C4QF6_391 SNP 16.86 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1C4QF6_391 SNP 20.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1C4QF6_391 SNP 26.34 (cM) Automated name-based View Maps
v_2274_384 SNP 18.84 Quercus robur - Genetic_A4_2015 - LG5 v_2274_384 SNP 24.09 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG5 v_2274_384 SNP 18.58 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 v_2274_384 SNP 26.34 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_2274_384 SNP 20.60 (cM) Automated name-based View Maps
s_1C0NP6_2848 SNP 19.76 Quercus robur - Genetic_x11P1_2015 - LG5 s_1C0NP6_2848 SNP 16.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1C0NP6_2848 SNP 27.22 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1C0NP6_2848 SNP 21.50 (cM) Automated name-based View Maps

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