CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_x3P_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_x3P_2015 [ View Map Set Info ]
Map Name: LG6
Map Start: 0.00 cM
Map Stop: 51.27 cM
Features by Type:
99 SNP
99 Total

Map Features

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Items 1 to 25 of 99.       of 4 | Next
Quercus robur - Genetic_x3P_2015 - LG6
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1A6BXG_1262 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A6BXG_1262 SNP 6.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1A6BXG_1262 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG6 s_1A6BXG_1262 SNP 0.00 (cM) Automated name-based View Maps
v_5030_178 SNP 1.55 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_5030_178 SNP 7.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 v_5030_178 SNP 0.29 (cM) Automated name-based View Maps
s_1A2GO9_398 SNP 2.17 Quercus robur - Genetic_x11P2_2015 - LG6 s_1A2GO9_398 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A2GO9_398 SNP 8.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_1A2GO9_398 SNP 6.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1A2GO9_398 SNP 1.69 (cM) Automated name-based View Maps
s_1A80CS_205 SNP 2.17 Quercus robur - Genetic_x11P1_2015 - LG6 s_1A80CS_205 SNP 1.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_1A80CS_205 SNP 6.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG6 s_1A80CS_205 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A80CS_205 SNP 8.10 (cM) Automated name-based View Maps
v_3496_117 SNP 2.17 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_3496_117 SNP 8.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 v_3496_117 SNP 6.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG6 v_3496_117 SNP 3.93 (cM) Automated name-based View Maps
s_1A2VJ2_669 SNP 2.17 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A2VJ2_669 SNP 8.50 (cM) Automated name-based View Maps
s_2HKD1A_1432 SNP 2.17 Quercus petraea - Genetic_Qs28m_2015 - LG6 s_2HKD1A_1432 SNP 3.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_2HKD1A_1432 SNP 8.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_2HKD1A_1432 SNP 1.71 (cM) Automated name-based View Maps
s_1AMGZ3_323 SNP 3.09 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AMGZ3_323 SNP 9.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1AMGZ3_323 SNP 3.14 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG6 s_1AMGZ3_323 SNP 3.51 (cM) Automated name-based View Maps
s_1CBM4I_782 SNP 3.71 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1CBM4I_782 SNP 10.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG6 s_1CBM4I_782 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1CBM4I_782 SNP 3.93 (cM) Automated name-based View Maps
s_1AMLZK_150 SNP 8.04 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AMLZK_150 SNP 14.50 (cM) Automated name-based View Maps
s_1A0V2L_404 SNP 8.66 Quercus robur - Genetic_A4_2015 - LG6 s_1A0V2L_404 SNP 9.88 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A0V2L_404 SNP 14.80 (cM) Automated name-based View Maps
s_1A0WMB_1269 SNP 8.97 Quercus robur - Genetic_x11P1_2015 - LG6 s_1A0WMB_1269 SNP 8.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A0WMB_1269 SNP 15.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG6 s_1A0WMB_1269 SNP 9.66 (cM) Automated name-based View Maps
s_1A2URM_1356 SNP 10.51 Quercus robur - Genetic_x11P2_2015 - LG6 s_1A2URM_1356 SNP 10.54 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1A2URM_1356 SNP 12.01 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A2URM_1356 SNP 17.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1A2URM_1356 SNP 9.55 (cM) Automated name-based View Maps
v_4794_184 SNP 10.82 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_4794_184 SNP 18.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 v_4794_184 SNP 22.83 (cM) Automated name-based View Maps
s_1BGFN3_1016 SNP 12.98 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1BGFN3_1016 SNP 21.40 (cM) Automated name-based View Maps
s_1A3V7D_1575 SNP 12.98 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A3V7D_1575 SNP 21.40 (cM) Automated name-based View Maps
s_1B4VRV_119 SNP 12.98 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1B4VRV_119 SNP 21.40 (cM) Automated name-based View Maps
s_1B5QK7_293 SNP 12.98 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1B5QK7_293 SNP 21.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1B5QK7_293 SNP 15.44 (cM) Automated name-based View Maps
s_1A6BGG_1176 SNP 12.98 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A6BGG_1176 SNP 21.40 (cM) Automated name-based View Maps
s_1BSIW0_537 SNP 12.98 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1BSIW0_537 SNP 21.40 (cM) Automated name-based View Maps
s_1ECCKR_456 SNP 12.98 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1ECCKR_456 SNP 21.40 (cM) Automated name-based View Maps
s_1AUX52_501 SNP 12.98 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AUX52_501 SNP 21.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1AUX52_501 SNP 12.93 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_1AUX52_501 SNP 20.31 (cM) Automated name-based View Maps
v_6109_232 SNP 12.98 Quercus petraea - Genetic_Qs28f_2015 - LG6 v_6109_232 SNP 15.72 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_6109_232 SNP 21.70 (cM) Automated name-based View Maps
s_1AGRCL_464 SNP 12.98 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AGRCL_464 SNP 21.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1AGRCL_464 SNP 15.72 (cM) Automated name-based View Maps
s_1B5789_1130 SNP 13.60 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1B5789_1130 SNP 23.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1B5789_1130 SNP 17.15 (cM) Automated name-based View Maps

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