CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_x3P_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG12
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_x3P_2015 [ View Map Set Info ]
Map Name: LG12
Map Start: 0.00 cM
Map Stop: 49.71 cM
Features by Type:
94 SNP
94 Total

Map Features

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Items 1 to 25 of 94.       of 4 | Next
Quercus robur - Genetic_x3P_2015 - LG12
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1A63EI_2068 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG12 s_1A63EI_2068 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A63EI_2068 SNP 1.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG12 s_1A63EI_2068 SNP 0.00 (cM) Automated name-based View Maps
s_AXE9X_268 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG12 s_AXE9X_268 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_AXE9X_268 SNP 1.10 (cM) Automated name-based View Maps
s_1A0H8N_113 SNP 0.31 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A0H8N_113 SNP 2.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG12 s_1A0H8N_113 SNP 1.12 (cM) Automated name-based View Maps
s_1CTJ3J_556 SNP 1.24 Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1CTJ3J_556 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1CTJ3J_556 SNP 3.10 (cM) Automated name-based View Maps
s_1ATY_575 SNP 1.54 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1ATY_575 SNP 3.40 (cM) Automated name-based View Maps
s_1AX9P8_943 SNP 1.54 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1AX9P8_943 SNP 3.40 (cM) Automated name-based View Maps
s_1A0K59_1448 SNP 1.85 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A0K59_1448 SNP 3.70 (cM) Automated name-based View Maps
s_1A87WX_1060 SNP 2.16 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A87WX_1060 SNP 4.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG12 s_1A87WX_1060 SNP 0.00 (cM) Automated name-based View Maps
v_4694_276 SNP 4.32 Quercus petraea - Genetic_Qs21_2015 - LG12 v_4694_276 SNP 2.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 v_4694_276 SNP 6.20 (cM) Automated name-based View Maps
s_2F20KC_1356 SNP 4.63 Quercus petraea - Genetic_Qs29_2015 - LG12 s_2F20KC_1356 SNP 8.79 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_2F20KC_1356 SNP 6.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 s_2F20KC_1356 SNP 3.93 (cM) Automated name-based View Maps
s_1BEL77_339 SNP 5.25 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1BEL77_339 SNP 7.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1BEL77_339 SNP 5.62 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG12 s_1BEL77_339 SNP 7.44 (cM) Automated name-based View Maps
s_1AD76Y_251 SNP 5.25 Quercus petraea - Genetic_Qs21_2015 - LG12 s_1AD76Y_251 SNP 2.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG12 s_1AD76Y_251 SNP 3.37 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1AD76Y_251 SNP 5.62 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1AD76Y_251 SNP 7.10 (cM) Automated name-based View Maps
s_1BUBZU_208 SNP 5.25 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1BUBZU_208 SNP 7.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG12 s_1BUBZU_208 SNP 3.37 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG12 s_1BUBZU_208 SNP 2.86 (cM) Automated name-based View Maps
s_1BF859_498 SNP 5.25 Quercus robur - Genetic_x11P1_2015 - LG12 s_1BF859_498 SNP 3.37 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG12 s_1BF859_498 SNP 2.86 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1BF859_498 SNP 7.10 (cM) Automated name-based View Maps
v_3759_197 SNP 7.72 Quercus robur - Genetic_A4_2015 - LG12 v_3759_197 SNP 10.19 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 v_3759_197 SNP 9.60 (cM) Automated name-based View Maps
s_1AXVCJ_853 SNP 8.03 Quercus robur - Genetic_x11P1_2015 - LG12 s_1AXVCJ_853 SNP 9.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG12 s_1AXVCJ_853 SNP 6.14 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1AXVCJ_853 SNP 9.60 (cM) Automated name-based View Maps
v_10140_119 SNP 11.74 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 v_10140_119 SNP 12.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 v_10140_119 SNP 9.55 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG12 v_10140_119 SNP 12.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG12 v_10140_119 SNP 11.74 (cM) Automated name-based View Maps
v_12087_132 SNP 12.05 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 v_12087_132 SNP 12.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG9 v_12087_132 SNP 31.17 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG9 v_12087_132 SNP 36.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 v_12087_132 SNP 35.00 (cM) Automated name-based View Maps
s_1DCSF0_381 SNP 12.66 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1DCSF0_381 SNP 13.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1DCSF0_381 SNP 10.12 (cM) Automated name-based View Maps
s_1COGYH_227 SNP 12.97 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1COGYH_227 SNP 13.40 (cM) Automated name-based View Maps
s_1A1IA1_239 SNP 13.59 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A1IA1_239 SNP 14.00 (cM) Automated name-based View Maps
s_1A6ZYA_766 SNP 14.21 Quercus robur - Genetic_x11P1_2015 - LG12 s_1A6ZYA_766 SNP 14.07 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A6ZYA_766 SNP 14.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG12 s_1A6ZYA_766 SNP 12.30 (cM) Automated name-based View Maps
s_1A5BAF_182 SNP 14.52 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A5BAF_182 SNP 15.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG12 s_1A5BAF_182 SNP 15.19 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG12 s_1A5BAF_182 SNP 14.93 (cM) Automated name-based View Maps
s_1BO7ME_895 SNP 15.44 Quercus petraea - Genetic_Qs28f_2015 - LG12 s_1BO7ME_895 SNP 15.73 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1BO7ME_895 SNP 16.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1BO7ME_895 SNP 11.80 (cM) Automated name-based View Maps
s_1AVTVP_914 SNP 16.06 Quercus robur - Genetic_x11P1_2015 - LG12 s_1AVTVP_914 SNP 18.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG12 s_1AVTVP_914 SNP 15.81 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1AVTVP_914 SNP 17.40 (cM) Automated name-based View Maps

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