CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_A4_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_A4_2015 [ View Map Set Info ]
Map Name: LG1
Map Start: 0.00 cM
Map Stop: 53.42 cM
Features by Type:
95 SNP
95 Total

Map Features

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Items 1 to 25 of 95.       of 4 | Next
Quercus robur - Genetic_A4_2015 - LG1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1D8OAY_519 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG1 s_1D8OAY_519 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1D8OAY_519 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1D8OAY_519 SNP 0.00 (cM) Automated name-based View Maps
s_1A5KNH_1650 SNP 0.31 Quercus robur - Genetic_x11P1_2015 - LG1 s_1A5KNH_1650 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A5KNH_1650 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1A5KNH_1650 SNP 0.00 (cM) Automated name-based View Maps
s_1AEHCS_328 SNP 2.78 Quercus petraea - Genetic_Qs21_2015 - LG1 s_1AEHCS_328 SNP 1.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1AEHCS_328 SNP 1.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1AEHCS_328 SNP 1.75 (cM) Automated name-based View Maps
s_1A0HOQ_452 SNP 2.78 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A0HOQ_452 SNP 1.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1A0HOQ_452 SNP 2.63 (cM) Automated name-based View Maps
v_13951_270 SNP 3.09 Quercus petraea - Genetic_Qs21_2015 - LG1 v_13951_270 SNP 1.71 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_13951_270 SNP 2.10 (cM) Automated name-based View Maps
v_7751_472 SNP 3.09 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_7751_472 SNP 2.90 (cM) Automated name-based View Maps
s_1A61LZ_664 SNP 3.40 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A61LZ_664 SNP 3.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1A61LZ_664 SNP 3.43 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG1 s_1A61LZ_664 SNP 2.25 (cM) Automated name-based View Maps
s_1AH7I_610 SNP 3.40 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1AH7I_610 SNP 3.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1AH7I_610 SNP 4.39 (cM) Automated name-based View Maps
s_1BE1VC_321 SNP 3.71 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1BE1VC_321 SNP 3.50 (cM) Automated name-based View Maps
s_1C27ND_524 SNP 3.71 Quercus robur - Genetic_x11P1_2015 - LG1 s_1C27ND_524 SNP 3.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1C27ND_524 SNP 3.50 (cM) Automated name-based View Maps
s_1A6SCF_1310 SNP 4.01 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A6SCF_1310 SNP 3.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG1 s_1A6SCF_1310 SNP 4.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1A6SCF_1310 SNP 4.57 (cM) Automated name-based View Maps
s_1ASTHK_964 SNP 4.32 Quercus robur - Genetic_x11P1_2015 - LG1 s_1ASTHK_964 SNP 5.62 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1ASTHK_964 SNP 3.50 (cM) Automated name-based View Maps
s_1AJHI_335 SNP 4.63 Quercus robur - Genetic_x11P2_2015 - LG1 s_1AJHI_335 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG1 s_1AJHI_335 SNP 5.62 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1AJHI_335 SNP 3.50 (cM) Automated name-based View Maps
v_8034_33 SNP 4.63 Quercus petraea - Genetic_Qs28m_2015 - LG1 v_8034_33 SNP 4.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 v_8034_33 SNP 3.47 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_8034_33 SNP 3.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 v_8034_33 SNP 5.14 (cM) Automated name-based View Maps
s_1AV06N_928 SNP 4.63 Quercus robur - Genetic_x11P2_2015 - LG1 s_1AV06N_928 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1AV06N_928 SNP 3.80 (cM) Automated name-based View Maps
s_1DD3HL_527 SNP 4.63 Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1DD3HL_527 SNP 5.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1DD3HL_527 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1DD3HL_527 SNP 4.10 (cM) Automated name-based View Maps
s_1A3ZO7_403 SNP 4.94 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A3ZO7_403 SNP 4.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1A3ZO7_403 SNP 8.78 (cM) Automated name-based View Maps
s_1B8KHV_683 SNP 5.56 Quercus petraea - Genetic_Qs29_2015 - LG1 s_1B8KHV_683 SNP 10.53 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1B8KHV_683 SNP 5.00 (cM) Automated name-based View Maps
s_1A5O64_1214 SNP 5.56 Quercus petraea - Genetic_Qs21_2015 - LG1 s_1A5O64_1214 SNP 4.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1A5O64_1214 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG1 s_1A5O64_1214 SNP 7.87 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A5O64_1214 SNP 5.00 (cM) Automated name-based View Maps
s_1A3QJ8_1085 SNP 5.87 Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1A3QJ8_1085 SNP 6.86 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A3QJ8_1085 SNP 6.50 (cM) Automated name-based View Maps
s_1AHV63_755 SNP 5.87 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1AHV63_755 SNP 6.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1AHV63_755 SNP 7.02 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1AHV63_755 SNP 6.86 (cM) Automated name-based View Maps
s_AE01D3M3A_887 SNP 6.48 Quercus petraea - Genetic_Qs28m_2015 - LG1 s_AE01D3M3A_887 SNP 9.01 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_AE01D3M3A_887 SNP 6.50 (cM) Automated name-based View Maps
s_1CN5F9_492 SNP 8.64 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1CN5F9_492 SNP 7.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG1 s_1CN5F9_492 SNP 12.38 (cM) Automated name-based View Maps
s_1ASKHF_311 SNP 8.64 Quercus petraea - Genetic_Qs28m_2015 - LG1 s_1ASKHF_311 SNP 12.38 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1ASKHF_311 SNP 7.50 (cM) Automated name-based View Maps
v_7874_88 SNP 10.81 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_7874_88 SNP 9.70 (cM) Automated name-based View Maps

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