CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_A4_2015  (Reference Set)
Min. Correspondence
Align Vertically
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Maps LG4
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Magnification
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_A4_2015 [ View Map Set Info ]
Map Name: LG4
Map Start: 0.00 cM
Map Stop: 62.87 cM
Features by Type:
39 SNP
39 Total

Map Features

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Items 1 to 25 of 39.       of 2 | Next
Quercus robur - Genetic_A4_2015 - LG4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1A1QE5_1745 SNP 0.00 Quercus petraea - Genetic_Qs29_2015 - LG4 s_1A1QE5_1745 SNP 0.88 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1A1QE5_1745 SNP 0.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 s_1A1QE5_1745 SNP 1.12 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG4 s_1A1QE5_1745 SNP 1.43 (cM) Automated name-based View Maps
s_2FJTAR_654 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG4 s_2FJTAR_654 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2FJTAR_654 SNP 1.50 (cM) Automated name-based View Maps
s_1CTGJ0_718 SNP 2.16 Quercus robur - Genetic_x11P2_2015 - LG4 s_1CTGJ0_718 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1CTGJ0_718 SNP 3.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1CTGJ0_718 SNP 1.68 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 s_1CTGJ0_718 SNP 2.00 (cM) Automated name-based View Maps
s_1B9AWY_460 SNP 2.16 Quercus petraea - Genetic_Qs28f_2015 - LG4 s_1B9AWY_460 SNP 4.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1B9AWY_460 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1B9AWY_460 SNP 3.20 (cM) Automated name-based View Maps
s_1B5WK9_282 SNP 2.16 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1B5WK9_282 SNP 3.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1B5WK9_282 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1B5WK9_282 SNP 2.25 (cM) Automated name-based View Maps
s_1A4GFS_513 SNP 2.16 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1A4GFS_513 SNP 3.60 (cM) Automated name-based View Maps
s_1AGSI_434 SNP 2.16 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1AGSI_434 SNP 3.60 (cM) Automated name-based View Maps
s_1A3UE0_229 SNP 2.16 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1A3UE0_229 SNP 3.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 s_1A3UE0_229 SNP 5.62 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1A3UE0_229 SNP 2.81 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 s_1A3UE0_229 SNP 5.43 (cM) Automated name-based View Maps
s_1AKS15_1534 SNP 2.16 Quercus petraea - Genetic_Qs28f_2015 - LG4 s_1AKS15_1534 SNP 6.86 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1AKS15_1534 SNP 3.60 (cM) Automated name-based View Maps
s_1BYS6U_888 SNP 2.16 Quercus robur - Genetic_x11P1_2015 - LG4 s_1BYS6U_888 SNP 6.18 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1BYS6U_888 SNP 7.00 (cM) Automated name-based View Maps
s_1B91MJ_705 SNP 2.16 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1B91MJ_705 SNP 7.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1B91MJ_705 SNP 6.14 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1B91MJ_705 SNP 7.30 (cM) Automated name-based View Maps
s_AE02GNJ2E_1298 SNP 2.16 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_AE02GNJ2E_1298 SNP 8.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_AE02GNJ2E_1298 SNP 8.43 (cM) Automated name-based View Maps
s_1C7L1U_1553 SNP 7.43 Quercus petraea - Genetic_Qs28f_2015 - LG4 s_1C7L1U_1553 SNP 26.30 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1C7L1U_1553 SNP 16.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 s_1C7L1U_1553 SNP 21.96 (cM) Automated name-based View Maps
s_2FNZL4_492 SNP 10.52 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2FNZL4_492 SNP 20.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_2FNZL4_492 SNP 21.08 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG4 s_2FNZL4_492 SNP 30.31 (cM) Automated name-based View Maps
s_1A2H6P_1107 SNP 13.30 Quercus robur - Genetic_x11P1_2015 - LG4 s_1A2H6P_1107 SNP 22.54 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 s_1A2H6P_1107 SNP 26.03 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1A2H6P_1107 SNP 24.59 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1A2H6P_1107 SNP 23.40 (cM) Automated name-based View Maps
s_1C6GNP_1085 SNP 13.61 Quercus petraea - Genetic_Qs29_2015 - LG4 s_1C6GNP_1085 SNP 28.10 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1C6GNP_1085 SNP 23.70 (cM) Automated name-based View Maps
s_1AZCAD_611 SNP 16.39 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1AZCAD_611 SNP 25.60 (cM) Automated name-based View Maps
s_1BRNG7_1107 SNP 17.31 Quercus robur - Genetic_x11P1_2015 - LG4 s_1BRNG7_1107 SNP 24.79 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1BRNG7_1107 SNP 26.60 (cM) Automated name-based View Maps
s_1BVXH_1160 SNP 17.31 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1BVXH_1160 SNP 26.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1BVXH_1160 SNP 27.23 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1BVXH_1160 SNP 24.79 (cM) Automated name-based View Maps
s_1D0EH0_466 SNP 22.89 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1D0EH0_466 SNP 32.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1D0EH0_466 SNP 27.04 (cM) Automated name-based View Maps
v_402_554 SNP 22.89 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 v_402_554 SNP 32.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 v_402_554 SNP 33.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 v_402_554 SNP 27.04 (cM) Automated name-based View Maps
s_1ARX4Q_1151 SNP 22.89 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1ARX4Q_1151 SNP 32.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1ARX4Q_1151 SNP 27.04 (cM) Automated name-based View Maps
s_1CL8IZ_386 SNP 25.05 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1CL8IZ_386 SNP 34.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG4 s_1CL8IZ_386 SNP 37.24 (cM) Automated name-based View Maps
s_1BNM6X_427 SNP 25.05 Quercus petraea - Genetic_Qs28f_2015 - LG4 s_1BNM6X_427 SNP 45.19 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1BNM6X_427 SNP 35.15 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1BNM6X_427 SNP 35.10 (cM) Automated name-based View Maps
s_2G7JX7_1307 SNP 31.89 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2G7JX7_1307 SNP 38.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 s_2G7JX7_1307 SNP 41.77 (cM) Automated name-based View Maps

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