CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_A4_2015  (Reference Set)
Min. Correspondence
Align Vertically
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Maps LG5
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Magnification
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_A4_2015 [ View Map Set Info ]
Map Name: LG5
Map Start: 0.00 cM
Map Stop: 70.73 cM
Features by Type:
75 SNP
75 Total

Map Features

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Items 1 to 25 of 75.       of 3 | Next
Quercus robur - Genetic_A4_2015 - LG5
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1AWGVW_1011 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AWGVW_1011 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1AWGVW_1011 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1AWGVW_1011 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1AWGVW_1011 SNP 0.00 (cM) Automated name-based View Maps
s_1B8HOA_858 SNP 0.00 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1B8HOA_858 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1B8HOA_858 SNP 0.00 (cM) Automated name-based View Maps
s_1BXLEN_519 SNP 0.62 Quercus robur - Genetic_x11P1_2015 - LG5 s_1BXLEN_519 SNP 1.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1BXLEN_519 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1BXLEN_519 SNP 0.20 (cM) Automated name-based View Maps
s_1AD4BS_468 SNP 1.54 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AD4BS_468 SNP 1.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1AD4BS_468 SNP 2.25 (cM) Automated name-based View Maps
v_10767_211 SNP 2.16 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_10767_211 SNP 1.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 v_10767_211 SNP 0.00 (cM) Automated name-based View Maps
s_1AOM8_1080 SNP 3.09 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AOM8_1080 SNP 1.70 (cM) Automated name-based View Maps
s_1CXIV3_324 SNP 3.09 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1CXIV3_324 SNP 1.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 s_1CXIV3_324 SNP 1.75 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 s_1CXIV3_324 SNP 0.57 (cM) Automated name-based View Maps
s_1A34Y1_641 SNP 3.40 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1A34Y1_641 SNP 2.25 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A34Y1_641 SNP 1.80 (cM) Automated name-based View Maps
s_1A4INM_2287 SNP 3.40 Quercus petraea - Genetic_Qs28f_2015 - LG5 s_1A4INM_2287 SNP 1.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A4INM_2287 SNP 1.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1A4INM_2287 SNP 1.75 (cM) Automated name-based View Maps
s_1ADZ8J_508 SNP 3.40 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1ADZ8J_508 SNP 2.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 s_1ADZ8J_508 SNP 4.39 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 s_1ADZ8J_508 SNP 1.14 (cM) Automated name-based View Maps
v_9437_420 SNP 3.40 Quercus robur - Genetic_x11P1_2015 - LG5 v_9437_420 SNP 2.81 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_9437_420 SNP 2.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 v_9437_420 SNP 1.75 (cM) Automated name-based View Maps
s_1A1BBI_818 SNP 4.32 Quercus petraea - Genetic_Qs21_2015 - LG5 s_1A1BBI_818 SNP 2.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1A1BBI_818 SNP 3.37 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A1BBI_818 SNP 2.70 (cM) Automated name-based View Maps
s_1BGYKR_1033 SNP 7.10 Quercus robur - Genetic_x11P2_2015 - LG5 s_1BGYKR_1033 SNP 7.03 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1BGYKR_1033 SNP 4.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1BGYKR_1033 SNP 3.37 (cM) Automated name-based View Maps
s_1C4L9Q_524 SNP 7.10 Quercus robur - Genetic_x11P2_2015 - LG5 s_1C4L9Q_524 SNP 7.03 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1C4L9Q_524 SNP 4.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1C4L9Q_524 SNP 3.37 (cM) Automated name-based View Maps
s_1BAKFR_1171 SNP 7.10 Quercus robur - Genetic_x3P_2015 - LG5 s_1BAKFR_1171 SNP 5.87 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1BAKFR_1171 SNP 6.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1BAKFR_1171 SNP 9.66 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1BAKFR_1171 SNP 10.14 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG5 s_1BAKFR_1171 SNP 5.72 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1BAKFR_1171 SNP 4.50 (cM) Automated name-based View Maps
s_1B2IGK_265 SNP 8.96 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1B2IGK_265 SNP 6.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1B2IGK_265 SNP 9.66 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG5 s_1B2IGK_265 SNP 6.57 (cM) Automated name-based View Maps
s_AE01AUNZA_497 SNP 11.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_AE01AUNZA_497 SNP 8.70 (cM) Automated name-based View Maps
s_1AVMIQ_323 SNP 11.43 Quercus robur - Genetic_x11P2_2015 - LG5 s_1AVMIQ_323 SNP 10.54 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AVMIQ_323 SNP 8.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1AVMIQ_323 SNP 8.99 (cM) Automated name-based View Maps
s_1A0EA1_495 SNP 14.83 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A0EA1_495 SNP 11.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 s_1A0EA1_495 SNP 11.43 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 s_1A0EA1_495 SNP 17.57 (cM) Automated name-based View Maps
s_1A02PM_493 SNP 15.13 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A02PM_493 SNP 11.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1A02PM_493 SNP 14.05 (cM) Automated name-based View Maps
s_1A16JI_1480 SNP 16.37 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A16JI_1480 SNP 12.00 (cM) Automated name-based View Maps
s_1A3SFA_350 SNP 17.30 Quercus petraea - Genetic_Qs28f_2015 - LG5 s_1A3SFA_350 SNP 13.15 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A3SFA_350 SNP 13.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1A3SFA_350 SNP 12.93 (cM) Automated name-based View Maps
v_12206_204 SNP 19.46 Quercus petraea - Genetic_Qs29_2015 - LG5 v_12206_204 SNP 21.08 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_12206_204 SNP 14.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG5 v_12206_204 SNP 15.43 (cM) Automated name-based View Maps
v_12044_391 SNP 19.46 Quercus petraea - Genetic_Qs21_2015 - LG5 v_12044_391 SNP 15.43 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 v_12044_391 SNP 21.08 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_12044_391 SNP 14.70 (cM) Automated name-based View Maps
s_1A7CYC_507 SNP 20.69 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A7CYC_507 SNP 15.90 (cM) Automated name-based View Maps

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