CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_A4_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6
Start
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Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_A4_2015 [ View Map Set Info ]
Map Name: LG6
Map Start: 0.00 cM
Map Stop: 63.30 cM
Features by Type:
126 SNP
126 Total

Map Features

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Items 1 to 25 of 126.       of 6 | Next
Quercus robur - Genetic_A4_2015 - LG6
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
v_8764_417 SNP 21.30 Quercus robur - Genetic_x3P_2015 - LG6 v_8764_417 SNP 14.83 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_8764_417 SNP 25.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 v_8764_417 SNP 20.01 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 v_8764_417 SNP 16.86 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 v_8764_417 SNP 28.98 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG6 v_8764_417 SNP 17.99 (cM) Automated name-based View Maps
s_2G6VU9_1078 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_2G6VU9_1078 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_2G6VU9_1078 SNP 0.00 (cM) Automated name-based View Maps
v_7448_346 SNP 0.31 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_7448_346 SNP 0.30 (cM) Automated name-based View Maps
s_1BYW5Z_909 SNP 0.31 Quercus petraea - Genetic_Qs29_2015 - LG6 s_1BYW5Z_909 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1BYW5Z_909 SNP 2.60 (cM) Automated name-based View Maps
s_1A5ZRU_893 SNP 0.31 Quercus petraea - Genetic_Qs21_2015 - LG6 s_1A5ZRU_893 SNP 1.71 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A5ZRU_893 SNP 2.60 (cM) Automated name-based View Maps
v_7315_108 SNP 0.31 Quercus petraea - Genetic_Qs21_2015 - LG6 v_7315_108 SNP 0.86 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_7315_108 SNP 2.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 v_7315_108 SNP 0.00 (cM) Automated name-based View Maps
s_1AGVY8_1616 SNP 0.31 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AGVY8_1616 SNP 2.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_1AGVY8_1616 SNP 2.00 (cM) Automated name-based View Maps
s_1A88X8_1849 SNP 1.54 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A88X8_1849 SNP 4.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_1A88X8_1849 SNP 3.14 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 s_1A88X8_1849 SNP 0.88 (cM) Automated name-based View Maps
s_1AF8E5_774 SNP 1.54 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AF8E5_774 SNP 6.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_1AF8E5_774 SNP 4.57 (cM) Automated name-based View Maps
s_1A9JUL_720 SNP 2.16 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A9JUL_720 SNP 6.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1A9JUL_720 SNP 1.12 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG6 s_1A9JUL_720 SNP 0.88 (cM) Automated name-based View Maps
s_1B6Y5O_342 SNP 2.78 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1B6Y5O_342 SNP 7.50 (cM) Automated name-based View Maps
v_15889_262 SNP 3.09 Quercus petraea - Genetic_Qs28f_2015 - LG6 v_15889_262 SNP 1.14 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_15889_262 SNP 7.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG6 v_15889_262 SNP 2.25 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 v_15889_262 SNP 3.51 (cM) Automated name-based View Maps
s_1A7EB7_275 SNP 3.09 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A7EB7_275 SNP 8.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1A7EB7_275 SNP 1.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG6 s_1A7EB7_275 SNP 2.63 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 s_1A7EB7_275 SNP 3.51 (cM) Automated name-based View Maps
s_1B8VGC_1546 SNP 3.09 Quercus petraea - Genetic_Qs28m_2015 - LG6 s_1B8VGC_1546 SNP 3.37 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1B8VGC_1546 SNP 1.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1B8VGC_1546 SNP 8.10 (cM) Automated name-based View Maps
v_14944_333 SNP 4.63 Quercus petraea - Genetic_Qs28f_2015 - LG6 v_14944_333 SNP 2.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 v_14944_333 SNP 2.81 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 v_14944_333 SNP 8.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG6 v_14944_333 SNP 3.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_14944_333 SNP 9.30 (cM) Automated name-based View Maps
s_1A2SW_1217 SNP 5.56 Quercus petraea - Genetic_Qs29_2015 - LG6 s_1A2SW_1217 SNP 8.78 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A2SW_1217 SNP 10.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG6 s_1A2SW_1217 SNP 5.06 (cM) Automated name-based View Maps
s_1A2VKD_642 SNP 6.17 Quercus robur - Genetic_x11P1_2015 - LG6 s_1A2VKD_642 SNP 5.06 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A2VKD_642 SNP 11.10 (cM) Automated name-based View Maps
s_1EOR4D_923 SNP 8.03 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1EOR4D_923 SNP 12.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1EOR4D_923 SNP 4.86 (cM) Automated name-based View Maps
s_1B8C9Y_268 SNP 8.03 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1B8C9Y_268 SNP 12.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1B8C9Y_268 SNP 6.74 (cM) Automated name-based View Maps
s_1A1HAB_1136 SNP 8.64 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A1HAB_1136 SNP 13.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_1A1HAB_1136 SNP 10.29 (cM) Automated name-based View Maps
s_1B1PBX_1454 SNP 9.88 Quercus robur - Genetic_x11P1_2015 - LG6 s_1B1PBX_1454 SNP 7.87 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1B1PBX_1454 SNP 14.60 (cM) Automated name-based View Maps
v_7702_36 SNP 9.88 Quercus petraea - Genetic_Qs28f_2015 - LG6 v_7702_36 SNP 8.29 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 v_7702_36 SNP 17.57 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_7702_36 SNP 14.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG6 v_7702_36 SNP 7.91 (cM) Automated name-based View Maps
s_1A0V2L_404 SNP 9.88 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A0V2L_404 SNP 14.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG6 s_1A0V2L_404 SNP 8.66 (cM) Automated name-based View Maps
s_1AM960_441 SNP 9.88 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AM960_441 SNP 14.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG6 s_1AM960_441 SNP 10.68 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 s_1AM960_441 SNP 17.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1AM960_441 SNP 8.29 (cM) Automated name-based View Maps
s_1ARFNI_1006 SNP 10.19 Quercus robur - Genetic_x11P1_2015 - LG6 s_1ARFNI_1006 SNP 8.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1ARFNI_1006 SNP 15.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG6 s_1ARFNI_1006 SNP 13.43 (cM) Automated name-based View Maps

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