CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_A4_2015  (Reference Set)
Min. Correspondence
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Maps LG9
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Magnification
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_A4_2015 [ View Map Set Info ]
Map Name: LG9
Map Start: 0.00 cM
Map Stop: 55.28 cM
Features by Type:
104 SNP
104 Total

Map Features

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Items 1 to 25 of 104.       of 5 | Next
Quercus robur - Genetic_A4_2015 - LG9
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_2F28T4_553 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_2F28T4_553 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_2F28T4_553 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_2F28T4_553 SNP 0.00 (cM) Automated name-based View Maps
s_1AE5MB_75 SNP 0.31 Quercus robur - Genetic_x11P1_2015 - LG9 s_1AE5MB_75 SNP 1.12 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_1AE5MB_75 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1AE5MB_75 SNP 0.60 (cM) Automated name-based View Maps
s_1CFSVB_865 SNP 0.62 Quercus robur - Genetic_x11P2_2015 - LG9 s_1CFSVB_865 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1CFSVB_865 SNP 0.60 (cM) Automated name-based View Maps
s_1A4X34_1309 SNP 1.54 Quercus robur - Genetic_x11P1_2015 - LG9 s_1A4X34_1309 SNP 1.69 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1A4X34_1309 SNP 1.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_1A4X34_1309 SNP 0.88 (cM) Automated name-based View Maps
s_1B8SH7_1040 SNP 2.16 Quercus petraea - Genetic_Qs28f_2015 - LG9 s_1B8SH7_1040 SNP 0.86 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1B8SH7_1040 SNP 2.00 (cM) Automated name-based View Maps
s_1A8WLX_1145 SNP 2.16 Quercus robur - Genetic_x11P2_2015 - LG9 s_1A8WLX_1145 SNP 0.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_1A8WLX_1145 SNP 2.25 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1A8WLX_1145 SNP 2.00 (cM) Automated name-based View Maps
s_1B95KZ_324 SNP 2.16 Quercus petraea - Genetic_Qs29_2015 - LG9 s_1B95KZ_324 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1B95KZ_324 SNP 2.20 (cM) Automated name-based View Maps
s_1BRF38_1690 SNP 3.70 Quercus robur - Genetic_x11P2_2015 - LG9 s_1BRF38_1690 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1BRF38_1690 SNP 3.60 (cM) Automated name-based View Maps
v_7237_179 SNP 4.94 Quercus petraea - Genetic_Qs28m_2015 - LG9 v_7237_179 SNP 2.81 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 v_7237_179 SNP 3.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 v_7237_179 SNP 2.63 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG9 v_7237_179 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG9 v_7237_179 SNP 6.48 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 v_7237_179 SNP 5.62 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG9 v_7237_179 SNP 2.57 (cM) Automated name-based View Maps
s_2JUARQ_486 SNP 4.94 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_2JUARQ_486 SNP 3.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG9 s_2JUARQ_486 SNP 2.57 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG9 s_2JUARQ_486 SNP 2.81 (cM) Automated name-based View Maps
s_2GU751_606 SNP 4.94 Quercus petraea - Genetic_Qs28f_2015 - LG9 s_2GU751_606 SNP 2.57 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_2GU751_606 SNP 3.70 (cM) Automated name-based View Maps
s_1B9X3V_1265 SNP 5.25 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1B9X3V_1265 SNP 4.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_1B9X3V_1265 SNP 5.62 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG9 s_1B9X3V_1265 SNP 3.43 (cM) Automated name-based View Maps
s_1B015M_1061 SNP 6.48 Quercus petraea - Genetic_Qs21_2015 - LG9 s_1B015M_1061 SNP 3.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1B015M_1061 SNP 4.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_1B015M_1061 SNP 6.18 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_1B015M_1061 SNP 2.63 (cM) Automated name-based View Maps
v_15900_220 SNP 6.48 Quercus petraea - Genetic_Qs28m_2015 - LG9 v_15900_220 SNP 3.93 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG9 v_15900_220 SNP 3.71 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 v_15900_220 SNP 4.90 (cM) Automated name-based View Maps
s_1CD33A_387 SNP 7.41 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1CD33A_387 SNP 5.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG9 s_1CD33A_387 SNP 4.00 (cM) Automated name-based View Maps
s_1AF9VK_685 SNP 7.72 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1AF9VK_685 SNP 5.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG9 s_1AF9VK_685 SNP 3.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_1AF9VK_685 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_1AF9VK_685 SNP 7.87 (cM) Automated name-based View Maps
s_1DVZ4J_792 SNP 7.72 Quercus robur - Genetic_x11P1_2015 - LG9 s_1DVZ4J_792 SNP 7.87 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_1DVZ4J_792 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1DVZ4J_792 SNP 5.20 (cM) Automated name-based View Maps
v_12804_498 SNP 7.72 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 v_12804_498 SNP 5.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG9 v_12804_498 SNP 0.00 (cM) Automated name-based View Maps
s_AE01EJ938_1402 SNP 7.72 Quercus robur - Genetic_x11P2_2015 - LG9 s_AE01EJ938_1402 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_AE01EJ938_1402 SNP 8.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_AE01EJ938_1402 SNP 5.50 (cM) Automated name-based View Maps
s_1B5LC6_424 SNP 7.72 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1B5LC6_424 SNP 5.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG9 s_1B5LC6_424 SNP 6.18 (cM) Automated name-based View Maps
v_14884_160 SNP 8.03 Quercus petraea - Genetic_Qs28m_2015 - LG9 v_14884_160 SNP 7.31 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 v_14884_160 SNP 6.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG9 v_14884_160 SNP 4.86 (cM) Automated name-based View Maps
s_1A19IS_1242 SNP 8.95 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1A19IS_1242 SNP 6.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG9 s_1A19IS_1242 SNP 5.14 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG9 s_1A19IS_1242 SNP 7.87 (cM) Automated name-based View Maps
s_1AP8N0_1347 SNP 8.95 Quercus petraea - Genetic_Qs28m_2015 - LG9 s_1AP8N0_1347 SNP 7.87 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1AP8N0_1347 SNP 6.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG9 s_1AP8N0_1347 SNP 5.14 (cM) Automated name-based View Maps
s_2G7RB_615 SNP 8.95 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_2G7RB_615 SNP 7.10 (cM) Automated name-based View Maps
v_2754_222 SNP 9.88 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 v_2754_222 SNP 8.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG9 v_2754_222 SNP 5.71 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 v_2754_222 SNP 12.36 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG9 v_2754_222 SNP 6.29 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG9 v_2754_222 SNP 9.55 (cM) Automated name-based View Maps

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