CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_A4_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG11
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_A4_2015 [ View Map Set Info ]
Map Name: LG11
Map Start: 0.00 cM
Map Stop: 57.46 cM
Features by Type:
72 SNP
72 Total

Map Features

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Items 1 to 25 of 72.       of 3 | Next
Quercus robur - Genetic_A4_2015 - LG11
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
v_10277_482 SNP 0.00 Quercus petraea - Genetic_Qs28f_2015 - LG11 v_10277_482 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_10277_482 SNP 0.00 (cM) Automated name-based View Maps
v_5397_188 SNP 2.47 Quercus robur - Genetic_x11P1_2015 - LG11 v_5397_188 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 v_5397_188 SNP 1.75 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_5397_188 SNP 1.60 (cM) Automated name-based View Maps
v_828_328 SNP 2.47 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_828_328 SNP 2.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG11 v_828_328 SNP 1.24 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 v_828_328 SNP 3.93 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 v_828_328 SNP 3.51 (cM) Automated name-based View Maps
s_1APKMM_1127 SNP 3.40 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1APKMM_1127 SNP 2.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1APKMM_1127 SNP 3.93 (cM) Automated name-based View Maps
s_1ALWXN_902 SNP 3.40 Quercus petraea - Genetic_Qs28f_2015 - LG11 s_1ALWXN_902 SNP 4.29 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1ALWXN_902 SNP 2.50 (cM) Automated name-based View Maps
s_2HOI2D_1072 SNP 4.63 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_2HOI2D_1072 SNP 5.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_2HOI2D_1072 SNP 8.77 (cM) Automated name-based View Maps
s_1AULW3_314 SNP 4.63 Quercus petraea - Genetic_Qs21_2015 - LG11 s_1AULW3_314 SNP 3.15 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1AULW3_314 SNP 4.50 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1AULW3_314 SNP 5.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1AULW3_314 SNP 5.26 (cM) Automated name-based View Maps
s_1AWDG1_1190 SNP 4.63 Quercus robur - Genetic_x11P2_2015 - LG11 s_1AWDG1_1190 SNP 8.77 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1AWDG1_1190 SNP 4.50 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1AWDG1_1190 SNP 5.10 (cM) Automated name-based View Maps
s_1AV9IO_1337 SNP 4.63 Quercus robur - Genetic_x11P1_2015 - LG11 s_1AV9IO_1337 SNP 4.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1AV9IO_1337 SNP 8.77 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1AV9IO_1337 SNP 5.10 (cM) Automated name-based View Maps
s_1AVLVY_546 SNP 4.63 Quercus petraea - Genetic_Qs28f_2015 - LG11 s_1AVLVY_546 SNP 8.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1AVLVY_546 SNP 5.10 (cM) Automated name-based View Maps
s_1A0NFZ_191 SNP 4.63 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A0NFZ_191 SNP 5.10 (cM) Automated name-based View Maps
s_1A3Z44_150 SNP 4.63 Quercus robur - Genetic_A4_2015 - LG9 s_1A3Z44_150 SNP 28.71 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A3Z44_150 SNP 5.10 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1A3Z44_150 SNP 24.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_1A3Z44_150 SNP 26.41 (cM) Automated name-based View Maps
s_1BEFG6_1277 SNP 4.63 Quercus robur - Genetic_x11P1_2015 - LG11 s_1BEFG6_1277 SNP 4.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1BEFG6_1277 SNP 8.77 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1BEFG6_1277 SNP 5.10 (cM) Automated name-based View Maps
s_1ARSMJ_2168 SNP 4.63 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1ARSMJ_2168 SNP 5.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1ARSMJ_2168 SNP 8.77 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1ARSMJ_2168 SNP 4.50 (cM) Automated name-based View Maps
s_1A3C8G_778 SNP 4.63 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A3C8G_778 SNP 5.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1A3C8G_778 SNP 8.77 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1A3C8G_778 SNP 4.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG11 s_1A3C8G_778 SNP 4.57 (cM) Automated name-based View Maps
s_1A0691_1331 SNP 4.63 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A0691_1331 SNP 5.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1A0691_1331 SNP 8.77 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1A0691_1331 SNP 4.50 (cM) Automated name-based View Maps
s_1AF77U_359 SNP 4.63 Quercus robur - Genetic_x11P1_2015 - LG11 s_1AF77U_359 SNP 4.50 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1AF77U_359 SNP 5.10 (cM) Automated name-based View Maps
s_1ATAA_1637 SNP 8.65 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1ATAA_1637 SNP 7.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG11 s_1ATAA_1637 SNP 11.72 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1ATAA_1637 SNP 9.65 (cM) Automated name-based View Maps
s_1AQ27P_1542 SNP 9.58 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1AQ27P_1542 SNP 8.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1AQ27P_1542 SNP 10.53 (cM) Automated name-based View Maps
s_1BE7AV_1054 SNP 9.58 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1BE7AV_1054 SNP 8.60 (cM) Automated name-based View Maps
s_1C7EBD_1208 SNP 11.43 Quercus robur - Genetic_x11P2_2015 - LG11 s_1C7EBD_1208 SNP 13.16 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1C7EBD_1208 SNP 11.24 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG11 s_1C7EBD_1208 SNP 8.29 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1C7EBD_1208 SNP 10.50 (cM) Automated name-based View Maps
s_1A22U6_280 SNP 11.74 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A22U6_280 SNP 10.80 (cM) Automated name-based View Maps
s_1A6XDX_405 SNP 11.74 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A6XDX_405 SNP 10.80 (cM) Automated name-based View Maps
s_2H0QFK_347 SNP 11.74 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_2H0QFK_347 SNP 10.80 (cM) Automated name-based View Maps
s_1A9T6_1228 SNP 16.70 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A9T6_1228 SNP 16.80 (cM) Automated name-based View Maps

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