CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur-Genetic_A4_2015  (Reference Set)
Min. Correspondence
Align Vertically
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Maps LG12
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur - Genetic_A4_2015 [ View Map Set Info ]
Map Name: LG12
Map Start: 0.00 cM
Map Stop: 58.98 cM
Features by Type:
94 SNP
94 Total

Map Features

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Items 1 to 25 of 94.       of 4 | Next
Quercus robur - Genetic_A4_2015 - LG12
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1AS3QH_356 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1AS3QH_356 SNP 0.00 (cM) Automated name-based View Maps
s_2HQOUK_864 SNP 3.71 Quercus petraea - Genetic_Qs28m_2015 - LG12 s_2HQOUK_864 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_2HQOUK_864 SNP 3.70 (cM) Automated name-based View Maps
s_1C3PSV_1041 SNP 3.71 Quercus robur - Genetic_x11P2_2015 - LG12 s_1C3PSV_1041 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1C3PSV_1041 SNP 3.70 (cM) Automated name-based View Maps
s_2HO1U2_202 SNP 3.71 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_2HO1U2_202 SNP 3.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG12 s_2HO1U2_202 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG12 s_2HO1U2_202 SNP 1.69 (cM) Automated name-based View Maps
s_1BJ16D_1293 SNP 5.56 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1BJ16D_1293 SNP 6.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG12 s_1BJ16D_1293 SNP 7.92 (cM) Automated name-based View Maps
s_1A7FEI_1425 SNP 5.87 Quercus petraea - Genetic_Qs21_2015 - LG12 s_1A7FEI_1425 SNP 2.86 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A7FEI_1425 SNP 6.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG12 s_1A7FEI_1425 SNP 8.79 (cM) Automated name-based View Maps
s_1EO8V5_710 SNP 7.11 Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1EO8V5_710 SNP 5.62 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1EO8V5_710 SNP 7.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG12 s_1EO8V5_710 SNP 8.79 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG12 s_1EO8V5_710 SNP 7.73 (cM) Automated name-based View Maps
v_2797_141 SNP 7.72 Quercus petraea - Genetic_Qs29_2015 - LG4 v_2797_141 SNP 9.65 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 v_2797_141 SNP 9.60 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 v_2797_141 SNP 7.60 (cM) Automated name-based View Maps
s_1AVH7R_862 SNP 9.27 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1AVH7R_862 SNP 9.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG12 s_1AVH7R_862 SNP 6.14 (cM) Automated name-based View Maps
s_1A8MJL_402 SNP 10.19 Quercus petraea - Genetic_Qs29_2015 - LG12 s_1A8MJL_402 SNP 11.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A8MJL_402 SNP 9.20 (cM) Automated name-based View Maps
v_3759_197 SNP 10.19 Quercus robur - Genetic_x3P_2015 - LG12 v_3759_197 SNP 7.72 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 v_3759_197 SNP 9.60 (cM) Automated name-based View Maps
s_2GRLOB_525 SNP 10.19 Quercus petraea - Genetic_Qs28m_2015 - LG12 s_2GRLOB_525 SNP 7.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG12 s_2GRLOB_525 SNP 11.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_2GRLOB_525 SNP 9.60 (cM) Automated name-based View Maps
s_1AQSTJ_1140 SNP 10.81 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1AQSTJ_1140 SNP 9.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1AQSTJ_1140 SNP 7.30 (cM) Automated name-based View Maps
s_1BCDSH_1235 SNP 11.74 Quercus petraea - Genetic_Qs21_2015 - LG12 s_1BCDSH_1235 SNP 6.29 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1BCDSH_1235 SNP 11.30 (cM) Automated name-based View Maps
v_10140_119 SNP 11.74 Quercus robur - Genetic_x3P_2015 - LG12 v_10140_119 SNP 11.74 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 v_10140_119 SNP 12.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 v_10140_119 SNP 9.55 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG12 v_10140_119 SNP 12.30 (cM) Automated name-based View Maps
s_1ARTEY_447 SNP 13.90 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1ARTEY_447 SNP 12.60 (cM) Automated name-based View Maps
s_1BIFV5_564 SNP 16.68 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1BIFV5_564 SNP 15.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG12 s_1BIFV5_564 SNP 14.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG12 s_1BIFV5_564 SNP 12.30 (cM) Automated name-based View Maps
s_A4YYC_633 SNP 16.68 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_A4YYC_633 SNP 15.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG12 s_A4YYC_633 SNP 14.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG12 s_A4YYC_633 SNP 12.30 (cM) Automated name-based View Maps
s_1B2XL2_302 SNP 16.68 Quercus robur - Genetic_x11P1_2015 - LG12 s_1B2XL2_302 SNP 14.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1B2XL2_302 SNP 15.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG12 s_1B2XL2_302 SNP 12.30 (cM) Automated name-based View Maps
s_1A8WJA_717 SNP 20.39 Quercus petraea - Genetic_Qs21_2015 - LG12 s_1A8WJA_717 SNP 10.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A8WJA_717 SNP 15.90 (cM) Automated name-based View Maps
s_1A1S4N_395 SNP 21.32 Quercus robur - Genetic_x11P2_2015 - LG12 s_1A1S4N_395 SNP 14.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A1S4N_395 SNP 16.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG12 s_1A1S4N_395 SNP 15.73 (cM) Automated name-based View Maps
s_1AK7E3_781 SNP 21.93 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1AK7E3_781 SNP 17.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG12 s_1AK7E3_781 SNP 12.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG12 s_1AK7E3_781 SNP 16.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG12 s_1AK7E3_781 SNP 19.13 (cM) Automated name-based View Maps
s_2G9831_212 SNP 22.55 Quercus petraea - Genetic_Qs28f_2015 - LG12 s_2G9831_212 SNP 18.31 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_2G9831_212 SNP 18.10 (cM) Automated name-based View Maps
s_1B7RGA_1267 SNP 22.55 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1B7RGA_1267 SNP 18.10 (cM) Automated name-based View Maps
s_1A5FIY_375 SNP 22.55 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG12 s_1A5FIY_375 SNP 18.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG12 s_1A5FIY_375 SNP 18.45 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG12 s_1A5FIY_375 SNP 12.93 (cM) Automated name-based View Maps

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