CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs21_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1
Start
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Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs21_2015 [ View Map Set Info ]
Map Name: LG1
Map Start: 0.00 cM
Map Stop: 57.34 cM
Features by Type:
47 SNP
47 Total

Map Features

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Items 1 to 25 of 47.       of 2 | Next
Quercus petraea - Genetic_Qs21_2015 - LG1
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1BXS0Q_1704 SNP 0.86 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1BXS0Q_1704 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1BXS0Q_1704 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 s_1BXS0Q_1704 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG1 s_1BXS0Q_1704 SNP 0.00 (cM) Automated name-based View Maps
s_1CDSUA_1042 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG1 s_1CDSUA_1042 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1CDSUA_1042 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1CDSUA_1042 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1CDSUA_1042 SNP 0.00 (cM) Automated name-based View Maps
s_2G5N5L_1389 SNP 0.00 Quercus robur - Genetic_x11P1_2015 - LG1 s_2G5N5L_1389 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_2G5N5L_1389 SNP 0.00 (cM) Automated name-based View Maps
s_1AEHCS_328 SNP 1.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1AEHCS_328 SNP 1.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1AEHCS_328 SNP 2.78 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1AEHCS_328 SNP 1.75 (cM) Automated name-based View Maps
v_13951_270 SNP 1.71 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_13951_270 SNP 2.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 v_13951_270 SNP 3.09 (cM) Automated name-based View Maps
v_1377_170 SNP 1.71 Quercus robur - Genetic_x11P1_2015 - LG1 v_1377_170 SNP 1.69 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_1377_170 SNP 2.40 (cM) Automated name-based View Maps
v_5958_148 SNP 2.57 Quercus robur - Genetic_x11P1_2015 - LG1 v_5958_148 SNP 3.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 v_5958_148 SNP 3.70 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_5958_148 SNP 3.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 v_5958_148 SNP 3.51 (cM) Automated name-based View Maps
s_1CDHP5_662 SNP 2.86 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1CDHP5_662 SNP 3.50 (cM) Automated name-based View Maps
v_6691_155 SNP 3.71 Quercus petraea - Genetic_Qs28m_2015 - LG1 v_6691_155 SNP 4.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG1 v_6691_155 SNP 6.74 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 v_6691_155 SNP 7.42 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 v_6691_155 SNP 3.51 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 v_6691_155 SNP 5.71 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_6691_155 SNP 4.40 (cM) Automated name-based View Maps
s_1A5O64_1214 SNP 4.29 Quercus robur - Genetic_A4_2015 - LG1 s_1A5O64_1214 SNP 5.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG1 s_1A5O64_1214 SNP 7.87 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1A5O64_1214 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A5O64_1214 SNP 5.00 (cM) Automated name-based View Maps
s_1B72GW_391 SNP 7.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1B72GW_391 SNP 7.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG1 s_1B72GW_391 SNP 9.55 (cM) Automated name-based View Maps
s_1AGD1E_363 SNP 8.00 Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1AGD1E_363 SNP 8.86 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1AGD1E_363 SNP 7.90 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1AGD1E_363 SNP 8.70 (cM) Automated name-based View Maps
s_1A8GYH_966 SNP 8.57 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A8GYH_966 SNP 9.30 (cM) Automated name-based View Maps
s_1AGZMG_503 SNP 8.86 Quercus petraea - Genetic_Qs29_2015 - LG1 s_1AGZMG_503 SNP 17.56 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1AGZMG_503 SNP 9.60 (cM) Automated name-based View Maps
s_1AEEE6_589 SNP 12.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1AEEE6_589 SNP 13.20 (cM) Automated name-based View Maps
s_1ALBZK_1260 SNP 12.58 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1ALBZK_1260 SNP 13.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1ALBZK_1260 SNP 15.44 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG1 s_1ALBZK_1260 SNP 18.55 (cM) Automated name-based View Maps
s_1AWDOW_1030 SNP 12.58 Quercus robur - Genetic_x11P1_2015 - LG1 s_1AWDOW_1030 SNP 18.55 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1AWDOW_1030 SNP 13.50 (cM) Automated name-based View Maps
s_1CH15H_917 SNP 14.87 Quercus robur - Genetic_A4_2015 - LG1 s_1CH15H_917 SNP 17.60 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1CH15H_917 SNP 16.20 (cM) Automated name-based View Maps
s_1B4PVO_707 SNP 14.87 Quercus petraea - Genetic_Qs29_2015 - LG1 s_1B4PVO_707 SNP 22.82 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1B4PVO_707 SNP 16.20 (cM) Automated name-based View Maps
s_1BFURZ_500 SNP 15.72 Quercus robur - Genetic_A4_2015 - LG1 s_1BFURZ_500 SNP 18.52 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1BFURZ_500 SNP 17.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_1BFURZ_500 SNP 17.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG1 s_1BFURZ_500 SNP 21.36 (cM) Automated name-based View Maps
v_5939_256 SNP 16.30 Quercus robur - Genetic_x11P1_2015 - LG1 v_5939_256 SNP 23.05 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 v_5939_256 SNP 27.22 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_5939_256 SNP 18.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 v_5939_256 SNP 17.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 v_5939_256 SNP 22.55 (cM) Automated name-based View Maps
s_2FKX0W_893 SNP 18.01 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_2FKX0W_893 SNP 20.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 s_2FKX0W_893 SNP 18.44 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG1 s_2FKX0W_893 SNP 25.29 (cM) Automated name-based View Maps
s_1A4XSM_414 SNP 18.30 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A4XSM_414 SNP 20.80 (cM) Automated name-based View Maps
v_4080_536 SNP 20.58 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_4080_536 SNP 23.10 (cM) Automated name-based View Maps
v_1588_550 SNP 20.87 Quercus robur - Genetic_A4_2015 - LG1 v_1588_550 SNP 23.16 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_1588_550 SNP 23.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG1 v_1588_550 SNP 23.06 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 v_1588_550 SNP 27.49 (cM) Automated name-based View Maps

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