CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs21_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG2
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs21_2015 [ View Map Set Info ]
Map Name: LG2
Map Start: 0.00 cM
Map Stop: 112.43 cM
Features by Type:
129 SNP
129 Total

Map Features

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Items 1 to 25 of 129.       of 6 | Next
Quercus petraea - Genetic_Qs21_2015 - LG2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1AFV4O_1189 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AFV4O_1189 SNP 0.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG2 s_1AFV4O_1189 SNP 0.00 (cM) Automated name-based View Maps
v_1917_189 SNP 0.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 v_1917_189 SNP 0.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG2 v_1917_189 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG2 v_1917_189 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 v_1917_189 SNP 1.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG2 v_1917_189 SNP 0.00 (cM) Automated name-based View Maps
s_1BOTIP_938 SNP 0.57 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BOTIP_938 SNP 0.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 s_1BOTIP_938 SNP 0.00 (cM) Automated name-based View Maps
s_1A91J0_954 SNP 0.86 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A91J0_954 SNP 0.70 (cM) Automated name-based View Maps
s_1AOSRF_888 SNP 1.43 Quercus robur - Genetic_x3P_2015 - LG2 s_1AOSRF_888 SNP 0.62 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AOSRF_888 SNP 1.30 (cM) Automated name-based View Maps
s_1AJXU1_45 SNP 1.71 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AJXU1_45 SNP 1.50 (cM) Automated name-based View Maps
s_1BBASQ_742 SNP 2.86 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BBASQ_742 SNP 2.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG2 s_1BBASQ_742 SNP 0.56 (cM) Automated name-based View Maps
v_366_193 SNP 3.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 v_366_193 SNP 3.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 v_366_193 SNP 1.75 (cM) Automated name-based View Maps
s_1CMXCM_969 SNP 3.71 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1CMXCM_969 SNP 3.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG2 s_1CMXCM_969 SNP 3.40 (cM) Automated name-based View Maps
s_1A5Y13_1066 SNP 3.71 Quercus robur - Genetic_x11P1_2015 - LG2 s_1A5Y13_1066 SNP 1.69 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A5Y13_1066 SNP 3.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG2 s_1A5Y13_1066 SNP 3.70 (cM) Automated name-based View Maps
s_1AKX5L_342 SNP 3.71 Quercus robur - Genetic_x11P2_2015 - LG2 s_1AKX5L_342 SNP 6.14 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AKX5L_342 SNP 3.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG2 s_1AKX5L_342 SNP 1.69 (cM) Automated name-based View Maps
s_1A0NFW_595 SNP 3.71 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A0NFW_595 SNP 3.50 (cM) Automated name-based View Maps
s_1CM6K9_399 SNP 3.71 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1CM6K9_399 SNP 4.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG2 s_1CM6K9_399 SNP 2.81 (cM) Automated name-based View Maps
s_1A1HGJ_590 SNP 4.57 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A1HGJ_590 SNP 4.10 (cM) Automated name-based View Maps
s_1CEHMK_1519 SNP 5.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1CEHMK_1519 SNP 4.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG2 s_1CEHMK_1519 SNP 2.81 (cM) Automated name-based View Maps
v_999_1108 SNP 6.57 Quercus robur - Genetic_x3P_2015 - LG2 v_999_1108 SNP 4.94 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 v_999_1108 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 v_999_1108 SNP 5.50 (cM) Automated name-based View Maps
v_AC4YG23_547 SNP 6.86 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 v_AC4YG23_547 SNP 5.90 (cM) Automated name-based View Maps
s_2GR2F_215 SNP 6.86 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_2GR2F_215 SNP 5.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 s_2GR2F_215 SNP 3.51 (cM) Automated name-based View Maps
s_1BLG07_353 SNP 7.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BLG07_353 SNP 6.40 (cM) Automated name-based View Maps
s_1AHZS8_1359 SNP 7.71 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AHZS8_1359 SNP 6.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG2 s_1AHZS8_1359 SNP 6.48 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG2 s_1AHZS8_1359 SNP 8.43 (cM) Automated name-based View Maps
s_1A13W8_560 SNP 8.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1A13W8_560 SNP 7.20 (cM) Automated name-based View Maps
s_1BD9AB_1071 SNP 12.29 Quercus petraea - Genetic_Qs29_2015 - LG2 s_1BD9AB_1071 SNP 9.66 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1BD9AB_1071 SNP 11.20 (cM) Automated name-based View Maps
s_1AHWL1_357 SNP 13.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1AHWL1_357 SNP 11.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG2 s_1AHWL1_357 SNP 11.11 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG2 s_1AHWL1_357 SNP 9.66 (cM) Automated name-based View Maps
s_1APE6P_525 SNP 12.58 Quercus robur - Genetic_A4_2015 - LG2 s_1APE6P_525 SNP 11.11 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1APE6P_525 SNP 11.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG2 s_1APE6P_525 SNP 9.55 (cM) Automated name-based View Maps
s_1B0H8U_259 SNP 16.01 Quercus robur - Genetic_x11P2_2015 - LG2 s_1B0H8U_259 SNP 18.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG2 s_1B0H8U_259 SNP 12.35 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG2 s_1B0H8U_259 SNP 10.68 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG2 s_1B0H8U_259 SNP 14.00 (cM) Automated name-based View Maps

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