CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs21_2015  (Reference Set)
Min. Correspondence
Align Vertically
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Maps LG4
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs21_2015 [ View Map Set Info ]
Map Name: LG4
Map Start: 0.00 cM
Map Stop: 76.20 cM
Features by Type:
53 SNP
53 Total

Map Features

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Items 1 to 25 of 53.       of 3 | Next
Quercus petraea - Genetic_Qs21_2015 - LG4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1CPHMB_436 SNP 0.00 Quercus petraea - Genetic_Qs29_2015 - LG4 s_1CPHMB_436 SNP 0.88 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1CPHMB_436 SNP 0.90 (cM) Automated name-based View Maps
s_1B54MC_944 SNP 0.00 Quercus robur - Genetic_x3P_2015 - LG4 s_1B54MC_944 SNP 0.93 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1B54MC_944 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1B54MC_944 SNP 0.88 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1B54MC_944 SNP 1.20 (cM) Automated name-based View Maps
s_1CHOB1_253 SNP 0.29 Quercus robur - Genetic_x11P1_2015 - LG4 s_1CHOB1_253 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1CHOB1_253 SNP 1.50 (cM) Automated name-based View Maps
s_2F0T1P_73 SNP 0.86 Quercus robur - Genetic_x11P1_2015 - LG4 s_2F0T1P_73 SNP 1.12 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2F0T1P_73 SNP 2.10 (cM) Automated name-based View Maps
s_1AETFA_478 SNP 0.86 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1AETFA_478 SNP 2.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1AETFA_478 SNP 1.12 (cM) Automated name-based View Maps
s_2FRLHJ_122 SNP 0.86 Quercus robur - Genetic_x11P1_2015 - LG4 s_2FRLHJ_122 SNP 1.12 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2FRLHJ_122 SNP 2.10 (cM) Automated name-based View Maps
s_1CTGJ0_718 SNP 2.00 Quercus robur - Genetic_A4_2015 - LG4 s_1CTGJ0_718 SNP 2.16 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1CTGJ0_718 SNP 1.68 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1CTGJ0_718 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1CTGJ0_718 SNP 3.20 (cM) Automated name-based View Maps
v_12520_283 SNP 2.86 Quercus robur - Genetic_x11P2_2015 - LG4 v_12520_283 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 v_12520_283 SNP 1.68 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 v_12520_283 SNP 3.20 (cM) Automated name-based View Maps
s_1BHPHQ_1326 SNP 2.00 Quercus petraea - Genetic_Qs29_2015 - LG4 s_1BHPHQ_1326 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1BHPHQ_1326 SNP 3.20 (cM) Automated name-based View Maps
s_2HO4LV_897 SNP 5.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2HO4LV_897 SNP 3.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG4 s_2HO4LV_897 SNP 3.51 (cM) Automated name-based View Maps
s_1A3UE0_229 SNP 5.43 Quercus robur - Genetic_A4_2015 - LG4 s_1A3UE0_229 SNP 2.16 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1A3UE0_229 SNP 3.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG4 s_1A3UE0_229 SNP 5.62 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1A3UE0_229 SNP 2.81 (cM) Automated name-based View Maps
s_1B9VS_247 SNP 6.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1B9VS_247 SNP 5.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG4 s_1B9VS_247 SNP 5.25 (cM) Automated name-based View Maps
s_1C4U90_1246 SNP 7.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1C4U90_1246 SNP 5.20 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG4 s_1C4U90_1246 SNP 5.26 (cM) Automated name-based View Maps
s_1A8PHD_860 SNP 11.15 Quercus robur - Genetic_x11P1_2015 - LG4 s_1A8PHD_860 SNP 8.43 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1A8PHD_860 SNP 8.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG4 s_1A8PHD_860 SNP 8.34 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG4 s_1A8PHD_860 SNP 7.90 (cM) Automated name-based View Maps
s_2GV4EN_985 SNP 10.87 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2GV4EN_985 SNP 8.50 (cM) Automated name-based View Maps
s_AE02FQXIO_528 SNP 11.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_AE02FQXIO_528 SNP 8.80 (cM) Automated name-based View Maps
v_14820_161 SNP 11.15 Quercus petraea - Genetic_Qs28m_2015 - LG4 v_14820_161 SNP 14.06 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG4 v_14820_161 SNP 16.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 v_14820_161 SNP 8.80 (cM) Automated name-based View Maps
s_2F6DKZ_348 SNP 13.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_2F6DKZ_348 SNP 10.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG4 s_2F6DKZ_348 SNP 10.19 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_2F6DKZ_348 SNP 9.55 (cM) Automated name-based View Maps
s_1B40AL_845 SNP 13.72 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1B40AL_845 SNP 11.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG4 s_1B40AL_845 SNP 10.81 (cM) Automated name-based View Maps
s_1A8ZJP_2001 SNP 17.45 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1A8ZJP_2001 SNP 14.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG4 s_1A8ZJP_2001 SNP 18.45 (cM) Automated name-based View Maps
s_1AKS65_1395 SNP 20.88 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1AKS65_1395 SNP 18.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG4 s_1AKS65_1395 SNP 21.96 (cM) Automated name-based View Maps
s_1A6DJQ_418 SNP 22.59 Quercus petraea - Genetic_Qs29_2015 - LG4 s_1A6DJQ_418 SNP 22.84 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1A6DJQ_418 SNP 20.00 (cM) Automated name-based View Maps
s_1A2H6P_1107 SNP 26.03 Quercus robur - Genetic_x11P2_2015 - LG4 s_1A2H6P_1107 SNP 24.59 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1A2H6P_1107 SNP 23.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG4 s_1A2H6P_1107 SNP 13.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1A2H6P_1107 SNP 22.54 (cM) Automated name-based View Maps
s_1AR1CE_1423 SNP 26.03 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1AR1CE_1423 SNP 23.40 (cM) Automated name-based View Maps
s_1ARJU8_947 SNP 29.18 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG4 s_1ARJU8_947 SNP 26.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG4 s_1ARJU8_947 SNP 24.79 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG4 s_1ARJU8_947 SNP 27.23 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG4 s_1ARJU8_947 SNP 20.70 (cM) Automated name-based View Maps

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