CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs21_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG5
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs21_2015 [ View Map Set Info ]
Map Name: LG5
Map Start: 0.00 cM
Map Stop: 74.71 cM
Features by Type:
70 SNP
70 Total

Map Features

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Items 1 to 25 of 70.       of 3 | Next
Quercus petraea - Genetic_Qs21_2015 - LG5
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
v_10767_211 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_10767_211 SNP 1.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 v_10767_211 SNP 2.16 (cM) Automated name-based View Maps
s_1CXIV3_324 SNP 0.57 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1CXIV3_324 SNP 1.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 s_1CXIV3_324 SNP 1.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_1CXIV3_324 SNP 3.09 (cM) Automated name-based View Maps
s_1ADZ8J_508 SNP 1.14 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1ADZ8J_508 SNP 2.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 s_1ADZ8J_508 SNP 4.39 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_1ADZ8J_508 SNP 3.40 (cM) Automated name-based View Maps
s_1AGS54_854 SNP 1.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AGS54_854 SNP 2.00 (cM) Automated name-based View Maps
s_1A1BBI_818 SNP 2.57 Quercus robur - Genetic_A4_2015 - LG5 s_1A1BBI_818 SNP 4.32 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1A1BBI_818 SNP 3.37 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A1BBI_818 SNP 2.70 (cM) Automated name-based View Maps
s_1AG5OQ_1088 SNP 4.57 Quercus robur - Genetic_x3P_2015 - LG5 s_1AG5OQ_1088 SNP 3.40 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AG5OQ_1088 SNP 2.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1AG5OQ_1088 SNP 3.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1AG5OQ_1088 SNP 2.63 (cM) Automated name-based View Maps
s_1EBQBK_764 SNP 3.71 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1EBQBK_764 SNP 2.90 (cM) Automated name-based View Maps
s_1A96RU_1278 SNP 6.57 Quercus robur - Genetic_x11P1_2015 - LG5 s_1A96RU_1278 SNP 3.37 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A96RU_1278 SNP 4.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1A96RU_1278 SNP 7.03 (cM) Automated name-based View Maps
s_1B9KYX_730 SNP 7.72 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1B9KYX_730 SNP 7.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 s_1B9KYX_730 SNP 11.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG5 s_1B9KYX_730 SNP 6.79 (cM) Automated name-based View Maps
s_1CWKA1_172 SNP 8.57 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1CWKA1_172 SNP 8.30 (cM) Automated name-based View Maps
s_1A1WA5_950 SNP 10.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A1WA5_950 SNP 10.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 s_1A1WA5_950 SNP 14.06 (cM) Automated name-based View Maps
s_1A6ZXS_174 SNP 10.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A6ZXS_174 SNP 10.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG5 s_1A6ZXS_174 SNP 8.95 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 s_1A6ZXS_174 SNP 14.06 (cM) Automated name-based View Maps
s_2JX616_737 SNP 12.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_2JX616_737 SNP 11.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG5 s_2JX616_737 SNP 9.26 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_2JX616_737 SNP 13.18 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_2JX616_737 SNP 11.80 (cM) Automated name-based View Maps
s_1C5XFJ_252 SNP 12.00 Quercus robur - Genetic_x11P2_2015 - LG5 s_1C5XFJ_252 SNP 14.93 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG5 s_1C5XFJ_252 SNP 9.26 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1C5XFJ_252 SNP 11.50 (cM) Automated name-based View Maps
s_2FNVOR_481 SNP 12.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_2FNVOR_481 SNP 11.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG5 s_2FNVOR_481 SNP 9.26 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_2FNVOR_481 SNP 12.37 (cM) Automated name-based View Maps
s_1A0EA1_495 SNP 11.43 Quercus petraea - Genetic_Qs29_2015 - LG5 s_1A0EA1_495 SNP 17.57 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A0EA1_495 SNP 11.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_1A0EA1_495 SNP 14.83 (cM) Automated name-based View Maps
s_1B2B9V_467 SNP 12.00 Quercus petraea - Genetic_Qs29_2015 - LG5 s_1B2B9V_467 SNP 17.57 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1B2B9V_467 SNP 11.50 (cM) Automated name-based View Maps
s_1AKF86_528 SNP 12.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AKF86_528 SNP 11.50 (cM) Automated name-based View Maps
s_1BHC4X_962 SNP 12.00 Quercus petraea - Genetic_Qs29_2015 - LG5 s_1BHC4X_962 SNP 18.45 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1BHC4X_962 SNP 12.10 (cM) Automated name-based View Maps
s_1A2PD8_241 SNP 12.57 Quercus robur - Genetic_x11P1_2015 - LG5 s_1A2PD8_241 SNP 12.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A2PD8_241 SNP 12.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1A2PD8_241 SNP 15.81 (cM) Automated name-based View Maps
v_12206_204 SNP 15.43 Quercus petraea - Genetic_Qs29_2015 - LG5 v_12206_204 SNP 21.08 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 v_12206_204 SNP 19.46 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_12206_204 SNP 14.70 (cM) Automated name-based View Maps
v_12044_391 SNP 15.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_12044_391 SNP 14.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 v_12044_391 SNP 19.46 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 v_12044_391 SNP 21.08 (cM) Automated name-based View Maps
s_2GBON0_421 SNP 16.58 Quercus robur - Genetic_x3P_2015 - LG5 s_2GBON0_421 SNP 12.66 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_2GBON0_421 SNP 14.90 (cM) Automated name-based View Maps
s_1BH5T4_503 SNP 17.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1BH5T4_503 SNP 15.80 (cM) Automated name-based View Maps
s_2H5LD7_429 SNP 20.87 Quercus petraea - Genetic_Qs29_2015 - LG5 s_2H5LD7_429 SNP 28.12 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_2H5LD7_429 SNP 19.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_2H5LD7_429 SNP 23.78 (cM) Automated name-based View Maps

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