CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs21_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs21_2015 [ View Map Set Info ]
Map Name: LG6
Map Start: 0.00 cM
Map Stop: 69.50 cM
Features by Type:
103 SNP
103 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 103.       of 5 | Next
Quercus petraea - Genetic_Qs21_2015 - LG6
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_2G6VU9_1078 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_2G6VU9_1078 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG6 s_2G6VU9_1078 SNP 0.00 (cM) Automated name-based View Maps
v_14061_224 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_14061_224 SNP 0.00 (cM) Automated name-based View Maps
v_7609_387 SNP 0.86 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_7609_387 SNP 1.70 (cM) Automated name-based View Maps
s_1A5ZRU_893 SNP 1.71 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A5ZRU_893 SNP 2.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG6 s_1A5ZRU_893 SNP 0.31 (cM) Automated name-based View Maps
v_7315_108 SNP 0.86 Quercus robur - Genetic_A4_2015 - LG6 v_7315_108 SNP 0.31 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_7315_108 SNP 2.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 v_7315_108 SNP 0.00 (cM) Automated name-based View Maps
s_1AGVY8_1616 SNP 2.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AGVY8_1616 SNP 2.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG6 s_1AGVY8_1616 SNP 0.31 (cM) Automated name-based View Maps
s_1A7L00_1353 SNP 2.57 Quercus petraea - Genetic_Qs29_2015 - LG6 s_1A7L00_1353 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A7L00_1353 SNP 3.40 (cM) Automated name-based View Maps
s_1A88X8_1849 SNP 3.14 Quercus robur - Genetic_A4_2015 - LG6 s_1A88X8_1849 SNP 1.54 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A88X8_1849 SNP 4.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 s_1A88X8_1849 SNP 0.88 (cM) Automated name-based View Maps
s_1AF8E5_774 SNP 4.57 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AF8E5_774 SNP 6.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG6 s_1AF8E5_774 SNP 1.54 (cM) Automated name-based View Maps
s_1A4ML4_325 SNP 4.57 Quercus robur - Genetic_x11P1_2015 - LG6 s_1A4ML4_325 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A4ML4_325 SNP 6.40 (cM) Automated name-based View Maps
s_1A5WAL_449 SNP 4.86 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A5WAL_449 SNP 6.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1A5WAL_449 SNP 0.00 (cM) Automated name-based View Maps
s_1ESLKK_1358 SNP 4.86 Quercus robur - Genetic_x11P1_2015 - LG6 s_1ESLKK_1358 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1ESLKK_1358 SNP 6.60 (cM) Automated name-based View Maps
s_1A9O0J_1663 SNP 4.86 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A9O0J_1663 SNP 6.60 (cM) Automated name-based View Maps
s_1A2GO9_398 SNP 6.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A2GO9_398 SNP 8.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG6 s_1A2GO9_398 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1A2GO9_398 SNP 1.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG6 s_1A2GO9_398 SNP 2.17 (cM) Automated name-based View Maps
s_1A80CS_205 SNP 6.29 Quercus robur - Genetic_x11P1_2015 - LG6 s_1A80CS_205 SNP 1.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG6 s_1A80CS_205 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1A80CS_205 SNP 8.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG6 s_1A80CS_205 SNP 2.17 (cM) Automated name-based View Maps
v_3496_117 SNP 6.57 Quercus robur - Genetic_x3P_2015 - LG6 v_3496_117 SNP 2.17 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_3496_117 SNP 8.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG6 v_3496_117 SNP 3.93 (cM) Automated name-based View Maps
s_1AMQ8F_1486 SNP 7.14 Quercus robur - Genetic_x11P1_2015 - LG6 s_1AMQ8F_1486 SNP 1.69 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG6 s_1AMQ8F_1486 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AMQ8F_1486 SNP 8.40 (cM) Automated name-based View Maps
s_1EK5WC_920 SNP 7.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1EK5WC_920 SNP 9.10 (cM) Automated name-based View Maps
v_14944_333 SNP 8.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_14944_333 SNP 9.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 v_14944_333 SNP 2.81 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG6 v_14944_333 SNP 4.63 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG6 v_14944_333 SNP 3.93 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 v_14944_333 SNP 2.29 (cM) Automated name-based View Maps
s_1AUTPO_535 SNP 7.71 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AUTPO_535 SNP 9.30 (cM) Automated name-based View Maps
s_1AONYV_1152 SNP 8.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1AONYV_1152 SNP 10.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG6 s_1AONYV_1152 SNP 3.14 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG6 s_1AONYV_1152 SNP 3.93 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG6 s_1AONYV_1152 SNP 4.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG6 s_1AONYV_1152 SNP 3.51 (cM) Automated name-based View Maps
s_1ASOV_725 SNP 8.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1ASOV_725 SNP 10.00 (cM) Automated name-based View Maps
s_2GI736_533 SNP 9.14 Quercus robur - Genetic_x11P1_2015 - LG6 s_2GI736_533 SNP 6.74 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_2GI736_533 SNP 12.80 (cM) Automated name-based View Maps
v_12315_24 SNP 10.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 v_12315_24 SNP 12.80 (cM) Automated name-based View Maps
s_1BF59G_396 SNP 10.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG6 s_1BF59G_396 SNP 13.10 (cM) Automated name-based View Maps

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