CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs21_2015  (Reference Set)
Min. Correspondence
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Maps LG7
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs21_2015 [ View Map Set Info ]
Map Name: LG7
Map Start: 0.00 cM
Map Stop: 62.92 cM
Features by Type:
67 SNP
67 Total

Map Features

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Items 1 to 25 of 67.       of 3 | Next
Quercus petraea - Genetic_Qs21_2015 - LG7
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1A69R9_277 SNP 0.00 Quercus robur - Genetic_x11P2_2015 - LG7 s_1A69R9_277 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1A69R9_277 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_1A69R9_277 SNP 0.00 (cM) Automated name-based View Maps
s_1A1W90_1264 SNP 0.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1A1W90_1264 SNP 0.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_1A1W90_1264 SNP 0.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG7 s_1A1W90_1264 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_1A1W90_1264 SNP 0.56 (cM) Automated name-based View Maps
s_1AEOKC_1365 SNP 2.29 Quercus petraea - Genetic_Qs29_2015 - LG7 s_1AEOKC_1365 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1AEOKC_1365 SNP 2.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_1AEOKC_1365 SNP 2.25 (cM) Automated name-based View Maps
s_1BBCEE_805 SNP 2.57 Quercus robur - Genetic_x11P1_2015 - LG7 s_1BBCEE_805 SNP 2.25 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1BBCEE_805 SNP 2.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_1BBCEE_805 SNP 1.75 (cM) Automated name-based View Maps
s_1C5MXM_402 SNP 2.57 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1C5MXM_402 SNP 2.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_1C5MXM_402 SNP 1.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_1C5MXM_402 SNP 2.25 (cM) Automated name-based View Maps
s_1AWXW5_368 SNP 5.72 Quercus robur - Genetic_x11P1_2015 - LG7 s_1AWXW5_368 SNP 5.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1AWXW5_368 SNP 5.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_1AWXW5_368 SNP 2.63 (cM) Automated name-based View Maps
s_1A458M_1306 SNP 5.72 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1A458M_1306 SNP 5.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG7 s_1A458M_1306 SNP 3.51 (cM) Automated name-based View Maps
s_2HDSH4_114 SNP 6.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_2HDSH4_114 SNP 5.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG7 s_2HDSH4_114 SNP 5.26 (cM) Automated name-based View Maps
v_12078_258 SNP 6.58 Quercus petraea - Genetic_Qs28m_2015 - LG7 v_12078_258 SNP 3.37 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 v_12078_258 SNP 6.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 v_12078_258 SNP 6.75 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG7 v_12078_258 SNP 2.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 v_12078_258 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG7 v_12078_258 SNP 3.40 (cM) Automated name-based View Maps
s_AE01CUW3X_1102 SNP 8.01 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_AE01CUW3X_1102 SNP 7.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG7 s_AE01CUW3X_1102 SNP 3.70 (cM) Automated name-based View Maps
s_1A6XQQ_1220 SNP 13.46 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1A6XQQ_1220 SNP 12.70 (cM) Automated name-based View Maps
s_1BD941_1019 SNP 13.74 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1BD941_1019 SNP 13.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG7 s_1BD941_1019 SNP 12.29 (cM) Automated name-based View Maps
s_1A528R_254 SNP 15.17 Quercus petraea - Genetic_Qs29_2015 - LG7 s_1A528R_254 SNP 12.29 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1A528R_254 SNP 13.00 (cM) Automated name-based View Maps
s_1A3GFF_398 SNP 15.46 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1A3GFF_398 SNP 13.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG7 s_1A3GFF_398 SNP 13.16 (cM) Automated name-based View Maps
s_1AHLGV_563 SNP 15.46 Quercus petraea - Genetic_Qs29_2015 - LG7 s_1AHLGV_563 SNP 13.16 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1AHLGV_563 SNP 13.80 (cM) Automated name-based View Maps
s_1A8TK5_500 SNP 17.17 Quercus petraea - Genetic_Qs29_2015 - LG7 s_1A8TK5_500 SNP 14.92 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1A8TK5_500 SNP 15.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_1A8TK5_500 SNP 11.41 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_1A8TK5_500 SNP 16.31 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG7 s_1A8TK5_500 SNP 10.19 (cM) Automated name-based View Maps
v_4126_174 SNP 21.75 Quercus robur - Genetic_x3P_2015 - LG7 v_4126_174 SNP 13.58 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 v_4126_174 SNP 19.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 v_4126_174 SNP 19.12 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 v_4126_174 SNP 19.31 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG7 v_4126_174 SNP 15.13 (cM) Automated name-based View Maps
v_15014_210 SNP 22.33 Quercus robur - Genetic_x3P_2015 - LG7 v_15014_210 SNP 14.51 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 v_15014_210 SNP 19.90 (cM) Automated name-based View Maps
s_1BRSKO_1036 SNP 23.76 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1BRSKO_1036 SNP 21.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG7 s_1BRSKO_1036 SNP 16.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG7 s_1BRSKO_1036 SNP 19.15 (cM) Automated name-based View Maps
s_2G9WA4_310 SNP 23.76 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_2G9WA4_310 SNP 21.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_2G9WA4_310 SNP 21.94 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG7 s_2G9WA4_310 SNP 16.05 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_2G9WA4_310 SNP 22.49 (cM) Automated name-based View Maps
s_1AHIQQ_681 SNP 24.33 Quercus robur - Genetic_x11P2_2015 - LG7 s_1AHIQQ_681 SNP 23.70 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1AHIQQ_681 SNP 21.90 (cM) Automated name-based View Maps
s_2JTKQZ_481 SNP 25.76 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_2JTKQZ_481 SNP 23.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_2JTKQZ_481 SNP 23.61 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG7 s_2JTKQZ_481 SNP 25.45 (cM) Automated name-based View Maps
s_1A7BHR_1032 SNP 26.33 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1A7BHR_1032 SNP 23.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG7 s_1A7BHR_1032 SNP 20.69 (cM) Automated name-based View Maps
s_1B5094_1739 SNP 26.33 Quercus robur - Genetic_x11P2_2015 - LG7 s_1B5094_1739 SNP 25.45 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1B5094_1739 SNP 23.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG7 s_1B5094_1739 SNP 24.74 (cM) Automated name-based View Maps
s_1A2OTK_782 SNP 26.33 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG7 s_1A2OTK_782 SNP 23.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG7 s_1A2OTK_782 SNP 21.08 (cM) Automated name-based View Maps

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