CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs21_2015  (Reference Set)
Min. Correspondence
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Maps LG9
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Magnification
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs21_2015 [ View Map Set Info ]
Map Name: LG9
Map Start: 0.00 cM
Map Stop: 52.63 cM
Features by Type:
62 SNP
62 Total

Map Features

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Items 1 to 25 of 62.       of 3 | Next
Quercus petraea - Genetic_Qs21_2015 - LG9
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_2F1PMY_384 SNP 0.00 Quercus robur - Genetic_x11P2_2015 - LG9 s_2F1PMY_384 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_2F1PMY_384 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_2F1PMY_384 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG9 s_2F1PMY_384 SNP 0.00 (cM) Automated name-based View Maps
s_1DNJ9J_1006 SNP 3.43 Quercus robur - Genetic_x11P1_2015 - LG9 s_1DNJ9J_1006 SNP 1.69 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_1DNJ9J_1006 SNP 0.88 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1DNJ9J_1006 SNP 1.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG9 s_1DNJ9J_1006 SNP 3.40 (cM) Automated name-based View Maps
s_2JHD8L_1003 SNP 3.43 Quercus robur - Genetic_x3P_2015 - LG9 s_2JHD8L_1003 SNP 6.48 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_2JHD8L_1003 SNP 3.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_2JHD8L_1003 SNP 3.37 (cM) Automated name-based View Maps
s_1B9X3V_1265 SNP 3.43 Quercus robur - Genetic_A4_2015 - LG9 s_1B9X3V_1265 SNP 5.25 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_1B9X3V_1265 SNP 5.62 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1B9X3V_1265 SNP 4.10 (cM) Automated name-based View Maps
s_1B015M_1061 SNP 3.43 Quercus robur - Genetic_x11P2_2015 - LG9 s_1B015M_1061 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_1B015M_1061 SNP 6.18 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG9 s_1B015M_1061 SNP 6.48 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1B015M_1061 SNP 4.30 (cM) Automated name-based View Maps
s_1AF9VK_685 SNP 3.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1AF9VK_685 SNP 5.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_1AF9VK_685 SNP 7.87 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG9 s_1AF9VK_685 SNP 7.72 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_1AF9VK_685 SNP 2.63 (cM) Automated name-based View Maps
s_1AHLDK_659 SNP 3.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1AHLDK_659 SNP 5.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG9 s_1AHLDK_659 SNP 6.74 (cM) Automated name-based View Maps
s_1C7SY2_341 SNP 4.86 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1C7SY2_341 SNP 6.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_1C7SY2_341 SNP 7.02 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_1C7SY2_341 SNP 9.55 (cM) Automated name-based View Maps
s_1A5TCC_299 SNP 5.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1A5TCC_299 SNP 7.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_1A5TCC_299 SNP 10.68 (cM) Automated name-based View Maps
s_1A11PB_1658 SNP 5.43 Quercus robur - Genetic_x11P1_2015 - LG9 s_1A11PB_1658 SNP 10.68 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1A11PB_1658 SNP 7.60 (cM) Automated name-based View Maps
s_1A8OSV_672 SNP 5.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1A8OSV_672 SNP 7.60 (cM) Automated name-based View Maps
v_2754_222 SNP 6.29 Quercus petraea - Genetic_Qs28f_2015 - LG9 v_2754_222 SNP 5.71 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG9 v_2754_222 SNP 9.88 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 v_2754_222 SNP 12.36 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 v_2754_222 SNP 8.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG9 v_2754_222 SNP 9.55 (cM) Automated name-based View Maps
s_2HQXA4_704 SNP 6.29 Quercus robur - Genetic_x11P1_2015 - LG9 s_2HQXA4_704 SNP 12.36 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_2HQXA4_704 SNP 8.78 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_2HQXA4_704 SNP 8.40 (cM) Automated name-based View Maps
s_1CY21S_1635 SNP 6.86 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1CY21S_1635 SNP 8.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG9 s_1CY21S_1635 SNP 1.75 (cM) Automated name-based View Maps
v_5944_190 SNP 7.15 Quercus petraea - Genetic_Qs29_2015 - LG9 v_5944_190 SNP 1.75 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 v_5944_190 SNP 9.65 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG9 v_5944_190 SNP 10.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG9 v_5944_190 SNP 10.68 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG9 v_5944_190 SNP 6.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 v_5944_190 SNP 12.36 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 v_5944_190 SNP 9.20 (cM) Automated name-based View Maps
s_1AJU3J_1388 SNP 7.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1AJU3J_1388 SNP 9.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG9 s_1AJU3J_1388 SNP 13.49 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_1AJU3J_1388 SNP 9.65 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG9 s_1AJU3J_1388 SNP 10.80 (cM) Automated name-based View Maps
s_1BM0XO_360 SNP 7.15 Quercus petraea - Genetic_Qs29_2015 - LG9 s_1BM0XO_360 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1BM0XO_360 SNP 9.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG9 s_1BM0XO_360 SNP 10.80 (cM) Automated name-based View Maps
s_1BOL3D_361 SNP 7.72 Quercus petraea - Genetic_Qs29_2015 - LG9 s_1BOL3D_361 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1BOL3D_361 SNP 9.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG9 s_1BOL3D_361 SNP 11.24 (cM) Automated name-based View Maps
s_1B4CHL_1671 SNP 7.72 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1B4CHL_1671 SNP 9.80 (cM) Automated name-based View Maps
v_12080_1202 SNP 8.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 v_12080_1202 SNP 10.40 (cM) Automated name-based View Maps
s_1B2VL9_846 SNP 9.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1B2VL9_846 SNP 11.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG9 s_1B2VL9_846 SNP 12.04 (cM) Automated name-based View Maps
s_2F1XGE_314 SNP 9.15 Quercus robur - Genetic_x11P1_2015 - LG9 s_2F1XGE_314 SNP 14.05 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_2F1XGE_314 SNP 11.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG9 s_2F1XGE_314 SNP 11.41 (cM) Automated name-based View Maps
s_AE01BXADI_157 SNP 9.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_AE01BXADI_157 SNP 11.20 (cM) Automated name-based View Maps
s_1A4VJ7_329 SNP 9.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1A4VJ7_329 SNP 11.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG9 s_1A4VJ7_329 SNP 5.26 (cM) Automated name-based View Maps
s_1ALB2M_1244 SNP 10.86 Quercus petraea - Genetic_Qs29_2015 - LG3 s_1ALB2M_1244 SNP 23.71 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG9 s_1ALB2M_1244 SNP 12.90 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG3 s_1ALB2M_1244 SNP 20.40 (cM) Automated name-based View Maps

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