CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs21_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG11
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs21_2015 [ View Map Set Info ]
Map Name: LG11
Map Start: 0.00 cM
Map Stop: 54.62 cM
Features by Type:
57 SNP
57 Total

Map Features

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Items 1 to 25 of 57.       of 3 | Next
Quercus petraea - Genetic_Qs21_2015 - LG11
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1CQ2O5_1067 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1CQ2O5_1067 SNP 0.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1CQ2O5_1067 SNP 0.56 (cM) Automated name-based View Maps
s_1ELHFI_365 SNP 0.57 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1ELHFI_365 SNP 1.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1ELHFI_365 SNP 1.69 (cM) Automated name-based View Maps
v_5398_481 SNP 0.57 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_5398_481 SNP 1.60 (cM) Automated name-based View Maps
v_7306_139 SNP 0.57 Quercus petraea - Genetic_Qs28f_2015 - LG11 v_7306_139 SNP 3.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG11 v_7306_139 SNP 1.24 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_7306_139 SNP 2.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 v_7306_139 SNP 3.51 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 v_7306_139 SNP 3.37 (cM) Automated name-based View Maps
s_1BSZHM_661 SNP 0.57 Quercus robur - Genetic_x11P1_2015 - LG11 s_1BSZHM_661 SNP 3.37 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1BSZHM_661 SNP 2.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1BSZHM_661 SNP 2.50 (cM) Automated name-based View Maps
s_1AULW3_314 SNP 3.15 Quercus robur - Genetic_x11P1_2015 - LG11 s_1AULW3_314 SNP 4.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1AULW3_314 SNP 5.26 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG11 s_1AULW3_314 SNP 4.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1AULW3_314 SNP 5.10 (cM) Automated name-based View Maps
s_1A3C8G_778 SNP 4.57 Quercus robur - Genetic_A4_2015 - LG11 s_1A3C8G_778 SNP 4.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1A3C8G_778 SNP 4.50 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A3C8G_778 SNP 5.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1A3C8G_778 SNP 8.77 (cM) Automated name-based View Maps
v_6082_115 SNP 3.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_6082_115 SNP 5.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 v_6082_115 SNP 4.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 v_6082_115 SNP 8.77 (cM) Automated name-based View Maps
s_1EL2WM_160 SNP 3.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1EL2WM_160 SNP 5.10 (cM) Automated name-based View Maps
s_1A1I85_1254 SNP 4.57 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A1I85_1254 SNP 5.10 (cM) Automated name-based View Maps
v_3401_135 SNP 4.86 Quercus petraea - Genetic_Qs28f_2015 - LG11 v_3401_135 SNP 8.86 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG11 v_3401_135 SNP 1.12 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_3401_135 SNP 5.60 (cM) Automated name-based View Maps
s_1A5N0A_257 SNP 5.15 Quercus robur - Genetic_x11P2_2015 - LG11 s_1A5N0A_257 SNP 8.77 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A5N0A_257 SNP 5.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1A5N0A_257 SNP 6.18 (cM) Automated name-based View Maps
v_6100_91 SNP 6.57 Quercus robur - Genetic_x11P1_2015 - LG11 v_6100_91 SNP 7.87 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_6100_91 SNP 7.70 (cM) Automated name-based View Maps
s_1AOOHX_2093 SNP 6.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1AOOHX_2093 SNP 7.70 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG11 s_1AOOHX_2093 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1AOOHX_2093 SNP 9.65 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1AOOHX_2093 SNP 7.87 (cM) Automated name-based View Maps
s_1C7EBD_1208 SNP 8.29 Quercus robur - Genetic_x11P2_2015 - LG11 s_1C7EBD_1208 SNP 13.16 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG11 s_1C7EBD_1208 SNP 11.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1C7EBD_1208 SNP 11.24 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1C7EBD_1208 SNP 10.50 (cM) Automated name-based View Maps
s_1B02XA_467 SNP 8.29 Quercus robur - Genetic_x11P1_2015 - LG11 s_1B02XA_467 SNP 11.24 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1B02XA_467 SNP 10.50 (cM) Automated name-based View Maps
s_1AIGVD_1288 SNP 12.01 Quercus robur - Genetic_x11P1_2015 - LG11 s_1AIGVD_1288 SNP 13.49 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG11 s_1AIGVD_1288 SNP 12.97 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1AIGVD_1288 SNP 12.30 (cM) Automated name-based View Maps
s_1BCJYW_1054 SNP 11.44 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1BCJYW_1054 SNP 12.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1BCJYW_1054 SNP 12.93 (cM) Automated name-based View Maps
v_12380_157 SNP 11.44 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_12380_157 SNP 12.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 v_12380_157 SNP 17.55 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 v_12380_157 SNP 12.93 (cM) Automated name-based View Maps
s_1BZL62_1416 SNP 12.01 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1BZL62_1416 SNP 12.30 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1BZL62_1416 SNP 13.49 (cM) Automated name-based View Maps
s_1AOXB0_1236 SNP 13.44 Quercus robur - Genetic_x3P_2015 - LG11 s_1AOXB0_1236 SNP 14.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1AOXB0_1236 SNP 15.17 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1AOXB0_1236 SNP 13.80 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1AOXB0_1236 SNP 19.30 (cM) Automated name-based View Maps
s_1AUYJ_825 SNP 13.44 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1AUYJ_825 SNP 13.80 (cM) Automated name-based View Maps
v_2967_70 SNP 15.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_2967_70 SNP 15.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG11 v_2967_70 SNP 15.44 (cM) Automated name-based View Maps
s_1DVH3I_1005 SNP 20.01 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1DVH3I_1005 SNP 18.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1DVH3I_1005 SNP 21.92 (cM) Automated name-based View Maps
s_1A053U_352 SNP 18.59 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A053U_352 SNP 18.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1A053U_352 SNP 21.92 (cM) Automated name-based View Maps

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