CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs28f_2015  (Reference Set)
Min. Correspondence
Align Vertically
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Maps LG5
Start
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Magnification
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 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs28f_2015 [ View Map Set Info ]
Map Name: LG5
Map Start: 0.00 cM
Map Stop: 54.59 cM
Features by Type:
96 SNP
96 Total

Map Features

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Items 1 to 25 of 96.       of 4 | Next
Quercus petraea - Genetic_Qs28f_2015 - LG5
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
v_4430_151 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_4430_151 SNP 0.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 v_4430_151 SNP 0.56 (cM) Automated name-based View Maps
v_12032_111 SNP 0.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_12032_111 SNP 0.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG5 v_12032_111 SNP 0.00 (cM) Automated name-based View Maps
s_1A4INM_2287 SNP 1.43 Quercus robur - Genetic_A4_2015 - LG5 s_1A4INM_2287 SNP 3.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1A4INM_2287 SNP 1.75 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A4INM_2287 SNP 1.80 (cM) Automated name-based View Maps
s_1AEN2Q_1654 SNP 1.71 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1AEN2Q_1654 SNP 2.25 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AEN2Q_1654 SNP 1.80 (cM) Automated name-based View Maps
s_1AFB0D_1017 SNP 3.14 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1AFB0D_1017 SNP 3.37 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AFB0D_1017 SNP 2.90 (cM) Automated name-based View Maps
s_1AL2X8_719 SNP 3.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AL2X8_719 SNP 2.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1AL2X8_719 SNP 1.75 (cM) Automated name-based View Maps
s_1BAKFR_1171 SNP 5.72 Quercus robur - Genetic_A4_2015 - LG5 s_1BAKFR_1171 SNP 7.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1BAKFR_1171 SNP 9.66 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG5 s_1BAKFR_1171 SNP 4.50 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1BAKFR_1171 SNP 6.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG5 s_1BAKFR_1171 SNP 5.87 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1BAKFR_1171 SNP 10.14 (cM) Automated name-based View Maps
s_1B2IGK_265 SNP 6.57 Quercus robur - Genetic_x11P2_2015 - LG5 s_1B2IGK_265 SNP 9.66 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1B2IGK_265 SNP 6.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_1B2IGK_265 SNP 8.96 (cM) Automated name-based View Maps
s_1A2HG4_165 SNP 6.57 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A2HG4_165 SNP 6.90 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1A2HG4_165 SNP 9.66 (cM) Automated name-based View Maps
s_2GI9VA_371 SNP 6.86 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_2GI9VA_371 SNP 7.20 (cM) Automated name-based View Maps
s_1ANXAC_208 SNP 10.58 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1ANXAC_208 SNP 15.77 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1ANXAC_208 SNP 10.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG5 s_1ANXAC_208 SNP 8.95 (cM) Automated name-based View Maps
s_1BJ6W0_1015 SNP 9.72 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1BJ6W0_1015 SNP 14.64 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1BJ6W0_1015 SNP 10.10 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 s_1BJ6W0_1015 SNP 14.94 (cM) Automated name-based View Maps
v_13970_456 SNP 12.01 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 v_13970_456 SNP 11.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 v_13970_456 SNP 18.02 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 v_13970_456 SNP 17.57 (cM) Automated name-based View Maps
s_1DEXGS_334 SNP 12.58 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1DEXGS_334 SNP 18.58 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1DEXGS_334 SNP 12.10 (cM) Automated name-based View Maps
s_1A3SFA_350 SNP 13.15 Quercus robur - Genetic_x11P1_2015 - LG5 s_1A3SFA_350 SNP 12.93 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A3SFA_350 SNP 13.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG5 s_1A3SFA_350 SNP 17.30 (cM) Automated name-based View Maps
s_1A8MIL_599 SNP 13.15 Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1A8MIL_599 SNP 20.26 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A8MIL_599 SNP 13.00 (cM) Automated name-based View Maps
s_1BACW0_232 SNP 13.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1BACW0_232 SNP 13.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1BACW0_232 SNP 20.83 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG5 s_1BACW0_232 SNP 19.33 (cM) Automated name-based View Maps
s_1AW0KS_331 SNP 13.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AW0KS_331 SNP 13.00 (cM) Automated name-based View Maps
s_APVE7_1182 SNP 13.43 Quercus robur - Genetic_x3P_2015 - LG5 s_APVE7_1182 SNP 11.42 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_APVE7_1182 SNP 16.68 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_APVE7_1182 SNP 13.70 (cM) Automated name-based View Maps
s_1A9JFY_633 SNP 13.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A9JFY_633 SNP 13.70 (cM) Automated name-based View Maps
s_1A6MK5_340 SNP 15.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1A6MK5_340 SNP 15.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG5 s_1A6MK5_340 SNP 18.44 (cM) Automated name-based View Maps
s_1AGB48_128 SNP 14.01 Quercus petraea - Genetic_Qs29_2015 - LG5 s_1AGB48_128 SNP 21.96 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1AGB48_128 SNP 15.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG5 s_1AGB48_128 SNP 24.20 (cM) Automated name-based View Maps
s_1BGONX_788 SNP 14.01 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1BGONX_788 SNP 15.60 (cM) Automated name-based View Maps
s_1B3IUP_485 SNP 16.01 Quercus robur - Genetic_x11P2_2015 - LG5 s_1B3IUP_485 SNP 21.95 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1B3IUP_485 SNP 16.40 (cM) Automated name-based View Maps
s_1B0063_1028 SNP 16.86 Quercus robur - Genetic_x11P2_2015 - LG5 s_1B0063_1028 SNP 22.83 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG5 s_1B0063_1028 SNP 17.30 (cM) Automated name-based View Maps

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