CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs28f_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG10
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs28f_2015 [ View Map Set Info ]
Map Name: LG10
Map Start: 0.00 cM
Map Stop: 55.75 cM
Features by Type:
79 SNP
79 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 79.       of 4 | Next
Quercus petraea - Genetic_Qs28f_2015 - LG10
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_1APHBW_422 SNP 0.00 Quercus robur - Genetic_A4_2015 - LG10 s_1APHBW_422 SNP 0.00 (cM) Automated name-based View Maps
s_1D2IQZ_2217 SNP 0.00 Quercus robur - Genetic_A4_2015 - LG10 s_1D2IQZ_2217 SNP 0.62 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG10 s_1D2IQZ_2217 SNP 0.00 (cM) Automated name-based View Maps
s_1CEHG2_1135 SNP 0.00 Quercus robur - Genetic_A4_2015 - LG10 s_1CEHG2_1135 SNP 0.93 (cM) Automated name-based View Maps
s_2FG4W7_651 SNP 0.00 No other positions
s_1D1BYU_661 SNP 0.00 Quercus robur - Genetic_x11P2_2015 - LG10 s_1D1BYU_661 SNP 0.00 (cM) Automated name-based View Maps
s_1AF1T8_626 SNP 0.00 Quercus robur - Genetic_A4_2015 - LG10 s_1AF1T8_626 SNP 1.24 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG10 s_1AF1T8_626 SNP 0.29 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG10 s_1AF1T8_626 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG10 s_1AF1T8_626 SNP 1.69 (cM) Automated name-based View Maps
s_1AX9L0_268 SNP 0.57 No other positions
s_1A9HO7_191 SNP 0.57 No other positions
s_1C9YH8_246 SNP 4.86 Quercus petraea - Genetic_Qs21_2015 - LG10 s_1C9YH8_246 SNP 3.14 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG10 s_1C9YH8_246 SNP 4.01 (cM) Automated name-based View Maps
s_2HPTBW_1405 SNP 4.29 Quercus robur - Genetic_x11P2_2015 - LG10 s_2HPTBW_1405 SNP 3.51 (cM) Automated name-based View Maps
s_1AMIWB_921 SNP 4.86 Quercus robur - Genetic_A4_2015 - LG10 s_1AMIWB_921 SNP 4.01 (cM) Automated name-based View Maps
s_1DZUCE_584 SNP 5.15 Quercus robur - Genetic_A4_2015 - LG10 s_1DZUCE_584 SNP 4.01 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG10 s_1DZUCE_584 SNP 3.51 (cM) Automated name-based View Maps
s_1A1M3H_1148 SNP 5.15 Quercus robur - Genetic_A4_2015 - LG10 s_1A1M3H_1148 SNP 4.63 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG10 s_1A1M3H_1148 SNP 3.51 (cM) Automated name-based View Maps
s_1AHNCO_1313 SNP 5.15 Quercus robur - Genetic_x11P2_2015 - LG10 s_1AHNCO_1313 SNP 4.39 (cM) Automated name-based View Maps
s_1DGW0E_407 SNP 5.43 Quercus robur - Genetic_A4_2015 - LG10 s_1DGW0E_407 SNP 4.94 (cM) Automated name-based View Maps
v_16125_293 SNP 5.43 No other positions
s_1BGA8Z_252 SNP 7.44 Quercus robur - Genetic_A4_2015 - LG10 s_1BGA8Z_252 SNP 5.87 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG10 s_1BGA8Z_252 SNP 4.39 (cM) Automated name-based View Maps
s_1CU2UK_312 SNP 7.72 No other positions
v_8006_228 SNP 6.58 Quercus robur - Genetic_x11P1_2015 - LG10 v_8006_228 SNP 7.87 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG10 v_8006_228 SNP 4.39 (cM) Automated name-based View Maps
v_11502_167 SNP 7.15 Quercus robur - Genetic_x11P2_2015 - LG10 v_11502_167 SNP 4.39 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG10 v_11502_167 SNP 5.87 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG10 v_11502_167 SNP 7.87 (cM) Automated name-based View Maps
s_1A8COB_888 SNP 6.58 Quercus robur - Genetic_x11P2_2015 - LG10 s_1A8COB_888 SNP 4.39 (cM) Automated name-based View Maps
v_1964_113 SNP 8.01 No other positions
s_1AJR70_442 SNP 9.44 No other positions
s_1A3TAQ_458 SNP 10.58 Quercus robur - Genetic_A4_2015 - LG10 s_1A3TAQ_458 SNP 8.65 (cM) Automated name-based View Maps
s_1B20QS_1559 SNP 11.44 Quercus robur - Genetic_x11P2_2015 - LG10 s_1B20QS_1559 SNP 6.14 (cM) Automated name-based View Maps

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