CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs28f_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG11
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs28f_2015 [ View Map Set Info ]
Map Name: LG11
Map Start: 0.00 cM
Map Stop: 51.46 cM
Features by Type:
106 SNP
106 Total

Map Features

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Items 1 to 25 of 106.       of 5 | Next
Quercus petraea - Genetic_Qs28f_2015 - LG11
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
v_10277_482 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_10277_482 SNP 0.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG11 v_10277_482 SNP 0.00 (cM) Automated name-based View Maps
v_6216_1046 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_6216_1046 SNP 0.00 (cM) Automated name-based View Maps
s_1A6RPG_1145 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A6RPG_1145 SNP 0.00 (cM) Automated name-based View Maps
s_1A760C_1586 SNP 0.86 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A760C_1586 SNP 0.00 (cM) Automated name-based View Maps
s_1A8M6H_1298 SNP 1.14 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A8M6H_1298 SNP 0.20 (cM) Automated name-based View Maps
v_7306_139 SNP 3.43 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_7306_139 SNP 2.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG11 v_7306_139 SNP 1.24 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 v_7306_139 SNP 3.37 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG11 v_7306_139 SNP 0.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 v_7306_139 SNP 3.51 (cM) Automated name-based View Maps
v_6724_152 SNP 4.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_6724_152 SNP 2.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 v_6724_152 SNP 3.93 (cM) Automated name-based View Maps
v_4371_407 SNP 4.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_4371_407 SNP 2.50 (cM) Automated name-based View Maps
s_1ALWXN_902 SNP 4.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1ALWXN_902 SNP 2.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG11 s_1ALWXN_902 SNP 3.40 (cM) Automated name-based View Maps
s_1A9EFL_1292 SNP 4.57 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A9EFL_1292 SNP 2.80 (cM) Automated name-based View Maps
s_1A21LQ_890 SNP 6.29 Quercus robur - Genetic_x3P_2015 - LG11 s_1A21LQ_890 SNP 3.40 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A21LQ_890 SNP 4.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG11 s_1A21LQ_890 SNP 0.00 (cM) Automated name-based View Maps
s_1C1L0W_1530 SNP 6.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1C1L0W_1530 SNP 4.50 (cM) Automated name-based View Maps
s_1A7B2G_412 SNP 8.00 Quercus petraea - Genetic_Qs28m_2015 - LG11 s_1A7B2G_412 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A7B2G_412 SNP 5.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG11 s_1A7B2G_412 SNP 3.70 (cM) Automated name-based View Maps
s_1AVLVY_546 SNP 8.00 Quercus robur - Genetic_A4_2015 - LG11 s_1AVLVY_546 SNP 4.63 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1AVLVY_546 SNP 5.10 (cM) Automated name-based View Maps
s_1AVP0V_255 SNP 8.00 Quercus petraea - Genetic_Qs28m_2015 - LG11 s_1AVP0V_255 SNP 0.56 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1AVP0V_255 SNP 5.10 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1AVP0V_255 SNP 8.77 (cM) Automated name-based View Maps
v_3401_135 SNP 8.86 Quercus petraea - Genetic_Qs28m_2015 - LG11 v_3401_135 SNP 1.12 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG11 v_3401_135 SNP 4.86 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_3401_135 SNP 5.60 (cM) Automated name-based View Maps
s_1AE786_852 SNP 8.86 Quercus petraea - Genetic_Qs28m_2015 - LG11 s_1AE786_852 SNP 1.68 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1AE786_852 SNP 6.20 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG11 s_1AE786_852 SNP 5.25 (cM) Automated name-based View Maps
v_11855_353 SNP 9.15 Quercus petraea - Genetic_Qs28m_2015 - LG11 v_11855_353 SNP 2.81 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_11855_353 SNP 6.50 (cM) Automated name-based View Maps
v_10643_171 SNP 10.57 Quercus petraea - Genetic_Qs28m_2015 - LG11 v_10643_171 SNP 5.62 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG11 v_10643_171 SNP 8.03 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 v_10643_171 SNP 7.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 v_10643_171 SNP 9.65 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 v_10643_171 SNP 7.87 (cM) Automated name-based View Maps
s_1ATAA_1637 SNP 11.72 Quercus robur - Genetic_x11P2_2015 - LG11 s_1ATAA_1637 SNP 9.65 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG11 s_1ATAA_1637 SNP 8.65 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1ATAA_1637 SNP 7.70 (cM) Automated name-based View Maps
s_1ARWIZ_458 SNP 10.29 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1ARWIZ_458 SNP 7.70 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG11 s_1ARWIZ_458 SNP 7.87 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1ARWIZ_458 SNP 9.65 (cM) Automated name-based View Maps
s_1AJZZP_2431 SNP 11.43 Quercus petraea - Genetic_Qs28m_2015 - LG11 s_1AJZZP_2431 SNP 6.18 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1AJZZP_2431 SNP 7.70 (cM) Automated name-based View Maps
s_1A0318_352 SNP 13.15 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A0318_352 SNP 8.60 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1A0318_352 SNP 10.53 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG11 s_1A0318_352 SNP 9.57 (cM) Automated name-based View Maps
s_1A2SCB_364 SNP 13.15 Quercus robur - Genetic_x3P_2015 - LG11 s_1A2SCB_364 SNP 9.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG11 s_1A2SCB_364 SNP 10.53 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1A2SCB_364 SNP 8.60 (cM) Automated name-based View Maps
s_1ASAJI_2252 SNP 13.72 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG11 s_1ASAJI_2252 SNP 8.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28m_2015 - LG11 s_1ASAJI_2252 SNP 8.99 (cM) Automated name-based View Maps

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