CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus petraea-Genetic_Qs28m_2015  (Reference Set)
Min. Correspondence
Align Vertically
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Maps LG1
Start
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Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus petraea - Genetic_Qs28m_2015 [ View Map Set Info ]
Map Name: LG1
Map Start: 0.00 cM
Map Stop: 50.03 cM
Features by Type:
97 SNP
97 Total

Map Features

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Items 1 to 25 of 97.       of 4 | Next
Quercus petraea - Genetic_Qs28m_2015 - LG1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
s_AE02G5GU9_516 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_AE02G5GU9_516 SNP 0.30 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_AE02G5GU9_516 SNP 0.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 s_AE02G5GU9_516 SNP 0.57 (cM) Automated name-based View Maps
s_1A4YNB_305 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A4YNB_305 SNP 0.80 (cM) Automated name-based View Maps
s_1A5BYK_2035 SNP 0.00 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A5BYK_2035 SNP 0.80 (cM) Automated name-based View Maps
s_1DFK66_275 SNP 0.56 Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1DFK66_275 SNP 2.00 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1DFK66_275 SNP 1.80 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1DFK66_275 SNP 2.63 (cM) Automated name-based View Maps
s_1A61LZ_664 SNP 2.25 Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1A61LZ_664 SNP 3.43 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1A61LZ_664 SNP 3.40 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A61LZ_664 SNP 3.20 (cM) Automated name-based View Maps
s_1A6SCF_1310 SNP 4.50 Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1A6SCF_1310 SNP 4.57 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A6SCF_1310 SNP 3.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1A6SCF_1310 SNP 4.01 (cM) Automated name-based View Maps
v_8034_33 SNP 4.50 Quercus robur - Genetic_x11P2_2015 - LG1 v_8034_33 SNP 3.47 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 v_8034_33 SNP 5.14 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_8034_33 SNP 3.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 v_8034_33 SNP 4.63 (cM) Automated name-based View Maps
s_1ALLFQ_463 SNP 4.50 Quercus petraea - Genetic_Qs29_2015 - LG1 s_1ALLFQ_463 SNP 7.90 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1ALLFQ_463 SNP 3.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1ALLFQ_463 SNP 4.57 (cM) Automated name-based View Maps
v_6691_155 SNP 4.50 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_6691_155 SNP 4.40 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P1_2015 - LG1 v_6691_155 SNP 6.74 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 v_6691_155 SNP 7.42 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 v_6691_155 SNP 3.51 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs21_2015 - LG1 v_6691_155 SNP 3.71 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 v_6691_155 SNP 5.71 (cM) Automated name-based View Maps
s_1AKLU6_532 SNP 4.50 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1AKLU6_532 SNP 4.40 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1AKLU6_532 SNP 5.71 (cM) Automated name-based View Maps
s_1A0DRN_495 SNP 8.44 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A0DRN_495 SNP 5.90 (cM) Automated name-based View Maps
s_AE01D3M3A_887 SNP 9.01 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_AE01D3M3A_887 SNP 6.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_AE01D3M3A_887 SNP 6.48 (cM) Automated name-based View Maps
v_12509_345 SNP 11.82 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 v_12509_345 SNP 7.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_x3P_2015 - LG1 v_12509_345 SNP 10.81 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 v_12509_345 SNP 8.57 (cM) Automated name-based View Maps
Quercus robur - Genetic_x11P2_2015 - LG1 v_12509_345 SNP 7.90 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 v_12509_345 SNP 14.05 (cM) Automated name-based View Maps
s_1CN5F9_492 SNP 12.38 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1CN5F9_492 SNP 7.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1CN5F9_492 SNP 8.64 (cM) Automated name-based View Maps
s_1ASKHF_311 SNP 12.38 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1ASKHF_311 SNP 7.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1ASKHF_311 SNP 8.64 (cM) Automated name-based View Maps
s_1A8YTK_478 SNP 11.82 Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1A8YTK_478 SNP 8.57 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A8YTK_478 SNP 7.50 (cM) Automated name-based View Maps
s_1A0CCD_941 SNP 12.38 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A0CCD_941 SNP 7.50 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1A0CCD_941 SNP 8.57 (cM) Automated name-based View Maps
s_1ANY2A_536 SNP 12.38 Quercus robur - Genetic_x3P_2015 - LG1 s_1ANY2A_536 SNP 12.36 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1ANY2A_536 SNP 8.10 (cM) Automated name-based View Maps
s_1AZCTX_158 SNP 14.06 Quercus robur - Genetic_x11P1_2015 - LG1 s_1AZCTX_158 SNP 10.68 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1AZCTX_158 SNP 17.56 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1AZCTX_158 SNP 9.00 (cM) Automated name-based View Maps
s_1A2IV6_144 SNP 14.06 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A2IV6_144 SNP 9.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1A2IV6_144 SNP 17.56 (cM) Automated name-based View Maps
s_1CFE4C_2114 SNP 14.06 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1CFE4C_2114 SNP 9.00 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1CFE4C_2114 SNP 9.14 (cM) Automated name-based View Maps
s_1BDNCB_1066 SNP 14.06 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1BDNCB_1066 SNP 9.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1BDNCB_1066 SNP 9.72 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1BDNCB_1066 SNP 17.56 (cM) Automated name-based View Maps
s_1A8ZCB_1136 SNP 14.06 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1A8ZCB_1136 SNP 9.60 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1A8ZCB_1136 SNP 9.72 (cM) Automated name-based View Maps
s_1APXDS_1237 SNP 14.63 Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1APXDS_1237 SNP 12.29 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs29_2015 - LG1 s_1APXDS_1237 SNP 18.44 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1APXDS_1237 SNP 12.35 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1APXDS_1237 SNP 11.20 (cM) Automated name-based View Maps
s_1B36QC_493 SNP 14.63 Quercus robur x Quercus petraea - Genetic_Quercus_composite_2015 - LG1 s_1B36QC_493 SNP 11.50 (cM) Automated name-based View Maps
Quercus robur - Genetic_A4_2015 - LG1 s_1B36QC_493 SNP 13.59 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28f_2015 - LG1 s_1B36QC_493 SNP 12.57 (cM) Automated name-based View Maps

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